View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14210_high_19 (Length: 336)
Name: NF14210_high_19
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14210_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 51354911 - 51354573
Alignment:
| Q |
1 |
ctcacaactcgtgtccgtagtggcaagggtcgtctgttcaattcaatctcaactcagatatcatatgacaattttcttttttgaatagatgcttaaaata |
100 |
Q |
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| T |
51354911 |
ctcacaactcgtgtctgtagtggcaagggtcgtctgttcaattcaatctcaactcagatatcatatgacaattttcttttttgcatagatgcttaaaata |
51354812 |
T |
|
| Q |
101 |
atgattttaggcaacttgaccagactcaaatgagaaagct------------atagaaaggaagaataggatgataattacattttgtgtatgttggcgg |
188 |
Q |
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||||||||||||||||||||||||||||||||| ||| | | | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51354811 |
atgattttaggcaacttgaccagactcaaatgacaaaatttacttaatgtttaaataaaggaagaataggatgataattacattttgtgtatgttggcgg |
51354712 |
T |
|
| Q |
189 |
aaaaacgtgttctcatagacaaggtgtgacacttgtttctgcaatctatcattttcctccataagcagtttgttcattgctgttaacttcctgttcacag |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51354711 |
aaaaacgtgttctcatagacaaggtgtgacacttgtttctgcaatctatcattttcctccataagcagtttgttcattgctgttaacttcctgttcacag |
51354612 |
T |
|
| Q |
289 |
cttgtaaccttccagcttctttcctctgcttctctctgc |
327 |
Q |
| |
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| T |
51354611 |
cttgtaaccttccagcttctttcctctgcttctctctgc |
51354573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 325
Target Start/End: Complemental strand, 4337105 - 4336978
Alignment:
| Q |
198 |
ttctcatagacaaggtgtgacacttgtttctgcaatctatcattttcctccataagcagtttgttcattgctgttaacttcctgttcacagcttgtaacc |
297 |
Q |
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|||||||| || ||||| ||||| || |||||||| ||||||||||||||||| ||||| || ||||| ||||| |||||||| |||||| |||| |||| |
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| T |
4337105 |
ttctcatacaccaggtgagacacctgcttctgcaacctatcattttcctccatcagcagcttattcatggctgtcaacttcctattcacaccttgcaacc |
4337006 |
T |
|
| Q |
298 |
ttccagcttctttcctctgcttctctct |
325 |
Q |
| |
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| || ||||| |||||||||||||| |
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| T |
4337005 |
tgaaagactcttttctctgcttctctct |
4336978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 198 - 325
Target Start/End: Original strand, 21743376 - 21743503
Alignment:
| Q |
198 |
ttctcatagacaaggtgtgacacttgtttctgcaatctatcattttcctccataagcagtttgttcattgctgttaacttcctgttcacagcttgtaacc |
297 |
Q |
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|||||| | ||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||||||| | || ||||| ||||||| ||| | || |
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| T |
21743376 |
ttctcacacacaagctgtgacacttgtttctgcaacctatcattttcctccatcaacaacttgttcattgcagacaatttcctattcacagtttgaagcc |
21743475 |
T |
|
| Q |
298 |
ttccagcttctttcctctgcttctctct |
325 |
Q |
| |
|
|| ||| ||||| |||||||||||||| |
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|
| T |
21743476 |
ttgaagcctcttttctctgcttctctct |
21743503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 322
Target Start/End: Original strand, 43510857 - 43510960
Alignment:
| Q |
219 |
acttgtttctgcaatctatcattttcctccataagcagtttgttcattgctgttaacttcctgttcacagcttgtaaccttccagcttctttcctctgct |
318 |
Q |
| |
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|||||||||||||| |||||||| || ||||| ||||| || ||||| || | |||||||| ||||||||||| |||||| ||| ||||| ||||||| |
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| T |
43510857 |
acttgtttctgcaacctatcattctcttccatcagcagcttattcatagcactcaacttcctattcacagcttgcaaccttgaagcctcttttctctgct |
43510956 |
T |
|
| Q |
319 |
tctc |
322 |
Q |
| |
|
|||| |
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|
| T |
43510957 |
tctc |
43510960 |
T |
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