View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14210_high_20 (Length: 326)
Name: NF14210_high_20
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14210_high_20 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 11 - 324
Target Start/End: Complemental strand, 4609574 - 4609260
Alignment:
| Q |
11 |
cagagatactaagacgaaaatacaatt-gcgaaaaattaaagacaatcttacaaattactgaaaataaaatgacatcagaggaaactttaaaatgacata |
109 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4609574 |
cagagatactgagacgaaaatacaatttgcgaaaaattaaagacaatcttacaaattactgaaaataaaatgacatcagagggaactttaaaatgacata |
4609475 |
T |
|
| Q |
110 |
acatagattgtacaaaatgtatagtttgctgaaaagtaaatgacttgaaatagaaatgcttgaaagtttaaaggacttggaattaaattgcttgaacata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4609474 |
acatagattgtacaaaatgtatagtttgctaaaaagtaaatgatttgaaatagaaatgcttgaaagtttaaaggacttggaattaaattgcttgaacata |
4609375 |
T |
|
| Q |
210 |
aattgcaaagaaacataaaagtttgatcacaaaatgtaaaggcagatcctgagaactaaaatccgttttaaattcatgagtaagcttcaaaatgcaagta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4609374 |
aattgcaaagaaacataaaagtttgatcacaaaatgtaaaggcagatcctgagaactaaaatccgttttaaattcatgagtacgcttcaaaatgcaagta |
4609275 |
T |
|
| Q |
310 |
tatgaccttatttac |
324 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4609274 |
tatgaccttatttac |
4609260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 87 - 248
Target Start/End: Complemental strand, 5107273 - 5107112
Alignment:
| Q |
87 |
agaggaaactttaaaatgacataacatagattgtacaaaatgtatagtttgctgaaaagtaaatgacttgaaatagaaatgcttgaaagtttaaaggact |
186 |
Q |
| |
|
|||| ||||||||||| ||||||||||| |||| ||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5107273 |
agagaaaactttaaaaagacataacataaattgaacaaaatctatagtttgctgaaaaataaatgacttgaaatagtaatgcttgaaagtttaaaggact |
5107174 |
T |
|
| Q |
187 |
tggaattaaattgcttgaacataaattgcaaagaaacataaaagtttgatcacaaaatgtaa |
248 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
5107173 |
tggaattaaattgcttgaaaataaattgcaaagaaatataaaagttttatcacaaaatgtaa |
5107112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 124 - 245
Target Start/End: Complemental strand, 5090385 - 5090264
Alignment:
| Q |
124 |
aaatgtatagtttgctgaaaagtaaatgacttgaaatagaaatgcttgaaagtttaaaggacttggaattaaattgcttgaacataaattgcaaagaaac |
223 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||| |
|
|
| T |
5090385 |
aaatgtaaagtttgctgaaaagtaaatgagttgaaatataaatgcttgaaagtttaaaggacttggaatttaattgcttggaaataaattacaaagaaac |
5090286 |
T |
|
| Q |
224 |
ataaaagtttgatcacaaaatg |
245 |
Q |
| |
|
||| |||||| ||||||||||| |
|
|
| T |
5090285 |
atataagttttatcacaaaatg |
5090264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 233
Target Start/End: Original strand, 37581853 - 37581928
Alignment:
| Q |
157 |
aaatagaaatgcttgaaagtttaaaggacttggaattaaattgcttgaacataaattgcaaagaaacataaaagttt |
233 |
Q |
| |
|
||||||||||||||||||| ||||| |||||| ||||| ||| |||||| ||||||||| ||||||| ||||||||| |
|
|
| T |
37581853 |
aaatagaaatgcttgaaag-ttaaaagacttgaaattagattacttgaaaataaattgcgaagaaacgtaaaagttt |
37581928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University