View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14210_high_25 (Length: 315)
Name: NF14210_high_25
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14210_high_25 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 21966981 - 21967094
Alignment:
| Q |
2 |
cgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
101 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21966981 |
cgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaatt |
21967080 |
T |
|
| Q |
102 |
aattaagggaccaa |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21967081 |
aattaagggaccaa |
21967094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 21989417 - 21989530
Alignment:
| Q |
2 |
cgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
101 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21989417 |
cgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaacttaaatt |
21989516 |
T |
|
| Q |
102 |
aattaagggaccaa |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
21989517 |
aattaagggaccaa |
21989530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 21966726 - 21966614
Alignment:
| Q |
2 |
cgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21966726 |
cgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
21966628 |
T |
|
| Q |
102 |
aattaagggaccaa |
115 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
21966627 |
aattaaaggaccaa |
21966614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 2 - 115
Target Start/End: Complemental strand, 21989162 - 21989050
Alignment:
| Q |
2 |
cgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
101 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21989162 |
cgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
21989064 |
T |
|
| Q |
102 |
aattaagggaccaa |
115 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
21989063 |
aattaaaggaccaa |
21989050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 24047127 - 24047237
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
24047127 |
aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc |
24047226 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
24047227 |
aacagtataat |
24047237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 23674851 - 23674961
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
23674851 |
aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc |
23674950 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
23674951 |
aacagtataat |
23674961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 23679356 - 23679466
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
23679356 |
aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc |
23679455 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
23679456 |
aacagtataat |
23679466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 24051593 - 24051703
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||| |
|
|
| T |
24051593 |
aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc |
24051692 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
24051693 |
aacagtataat |
24051703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 20487202 - 20487315
Alignment:
| Q |
2 |
cgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
101 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20487202 |
cgaccatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggaccaaaatgagactaaaatt |
20487301 |
T |
|
| Q |
102 |
aattaagggaccaa |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20487302 |
aattaagggaccaa |
20487315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 115
Target Start/End: Complemental strand, 20481799 - 20481688
Alignment:
| Q |
4 |
accatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaa |
103 |
Q |
| |
|
||||||||||||||||| | |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20481799 |
accatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgagactaaaattaa |
20481700 |
T |
|
| Q |
104 |
ttaagggaccaa |
115 |
Q |
| |
|
||||||||||| |
|
|
| T |
20481699 |
ataagggaccaa |
20481688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 24859182 - 24859292
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24859182 |
aagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
24859281 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
24859282 |
aacagtataat |
24859292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 24859099 - 24858989
Alignment:
| Q |
5 |
ccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaattaat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| ||| |||| ||| |||||||||||| | ||||||||||||||||||||||| |||||| |||| |
|
|
| T |
24859099 |
ccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaatgaacctaaaaataat |
24859000 |
T |
|
| Q |
105 |
taagggaccaa |
115 |
Q |
| |
|
||||||||||| |
|
|
| T |
24858999 |
taagggaccaa |
24858989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 2 - 115
Target Start/End: Original strand, 24860167 - 24860280
Alignment:
| Q |
2 |
cgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaatgaaactaaaatt |
101 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||| ||||||| ||||| ||||||||||||||| | |||||||||||||||||||||| |||||| | |
|
|
| T |
24860167 |
cgaccatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggaccaaaatgagtctaaaaat |
24860266 |
T |
|
| Q |
102 |
aattaagggaccaa |
115 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
24860267 |
aattaagggaccaa |
24860280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 27205837 - 27205727
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27205837 |
aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
27205738 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
27205737 |
aacagtataat |
27205727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 203 - 307
Target Start/End: Complemental strand, 27210298 - 27210192
Alignment:
| Q |
203 |
agtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaaca |
300 |
Q |
| |
|
|||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
27210298 |
agtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaata |
27210199 |
T |
|
| Q |
301 |
gtataat |
307 |
Q |
| |
|
||||||| |
|
|
| T |
27210198 |
gtataat |
27210192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 26897424 - 26897314
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26897424 |
aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
26897325 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
26897324 |
aacagtataat |
26897314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 199 - 307
Target Start/End: Complemental strand, 26901886 - 26901776
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26901886 |
aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
26901787 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
26901786 |
aacagtataat |
26901776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 26406737 - 26406847
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26406737 |
aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc |
26406836 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
26406837 |
aacagtataat |
26406847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 199 - 307
Target Start/End: Original strand, 26411203 - 26411313
Alignment:
| Q |
199 |
aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc |
296 |
Q |
| |
|
|||||||||| |||||||||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26411203 |
aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc |
26411302 |
T |
|
| Q |
297 |
aacagtataat |
307 |
Q |
| |
|
||||||||||| |
|
|
| T |
26411303 |
aacagtataat |
26411313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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