View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14210_high_27 (Length: 309)

Name: NF14210_high_27
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14210_high_27
NF14210_high_27
[»] chr4 (3 HSPs)
chr4 (9-272)||(20509731-20509999)
chr4 (50-250)||(22652653-22652852)
chr4 (125-201)||(40434556-40434632)
[»] chr5 (4 HSPs)
chr5 (9-264)||(12863981-12864241)
chr5 (9-264)||(12832006-12832266)
chr5 (125-244)||(19315570-19315692)
chr5 (129-201)||(42457117-42457189)
[»] chr7 (1 HSPs)
chr7 (9-251)||(41528748-41528992)
[»] chr1 (6 HSPs)
chr1 (50-272)||(34704016-34704243)
chr1 (121-201)||(6724318-6724398)
chr1 (125-247)||(25392930-25393054)
chr1 (125-186)||(22583800-22583861)
chr1 (125-186)||(33136722-33136783)
chr1 (125-193)||(3927199-3927267)
[»] chr2 (6 HSPs)
chr2 (92-189)||(9840191-9840290)
chr2 (49-198)||(27708717-27708868)
chr2 (65-189)||(39116842-39116968)
chr2 (125-272)||(30505059-30505203)
chr2 (125-189)||(27008671-27008735)
chr2 (132-189)||(2168110-2168167)
[»] chr6 (5 HSPs)
chr6 (121-272)||(12687525-12687679)
chr6 (121-189)||(27104697-27104765)
chr6 (121-189)||(27146506-27146574)
chr6 (126-198)||(17293342-17293414)
chr6 (129-184)||(10943610-10943665)
[»] chr8 (1 HSPs)
chr8 (94-201)||(31687005-31687114)
[»] chr3 (2 HSPs)
chr3 (125-189)||(25845140-25845204)
chr3 (125-189)||(51346840-51346904)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 272
Target Start/End: Complemental strand, 20509999 - 20509731
Alignment:
Q  9 gagatgaaacgggcaccgaagtaacagttggaacataagtcgttaaaaaattgtaggcactacggacagaaaaagattttgacgtttccaacgtccacaa 108  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||    
T  20509999 gagatgaaacgggcaccgaagtaacagttggaacctgagtcgttaaaaaattgtaggctctacgaacagaaaaagattttgatgttgccaacgtccacaa 20509900  T
Q  109 ccatttatcatc--tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccg---ccaa 203  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||    
T  20509899 ccatttatcatcattattaacctgcaaagtaacattttgaagcaataatacgaattcccccaccaactcctcctcccacgcaaacaaactccgcctccaa 20509800  T
Q  204 cgccacgccccaccctccttctcccaacccaactgacacatatcaaagacatactcctcctaaaacacc 272  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  20509799 cgccacgccccaccctcctcctcccaacccaactgacacatatcaaagacagactcctccttaaacacc 20509731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 50 - 250
Target Start/End: Complemental strand, 22652852 - 22652653
Alignment:
Q  50 gttaaaaaattgtaggcactacggacagaaaaagattttgacgtttccaacgtccacaaccatttatcatc--tattaacctgcaaagtaacattttgaa 147  Q
    ||||| ||||||||  ||||||| ||||||||||  |  || ||||| || ||||| |||||| |||||||  |||||||||||||||| ||||| ||||    
T  22652852 gttaagaaattgtaaacactacgaacagaaaaagcatgagatgtttcaaatgtccataaccatctatcatccttattaacctgcaaagtcacattatgaa 22652753  T
Q  148 gcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccgccaacgccacgccccaccctccttctcccaacccaactgacacatatc 247  Q
    ||| ||| || | ||| ||||||| ||||||||||||||||| |||   || ||| | ||||||| | ||||||| | ||||||| ||||||||||||||    
T  22652752 gcagtaacataagttctcccaccatctcctcctcccacgcaaacaa---cctccacctccacgcctctccctcctccccccaacctaactgacacatatc 22652656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 201
Target Start/End: Complemental strand, 40434632 - 40434556
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccgcc 201  Q
    |||||||||| | | |||||||||||||||    |||||||||| | ||||||| |||||||||| ||| |||||||    
T  40434632 aacctgcaaaatcatattttgaagcaataaacataattcccccaactactcctcttcccacgcaaacaacctccgcc 40434556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 12863981 - 12864241
Alignment:
Q  9 gagatgaaacgggcaccgaagtaacagttggaacataagtcgttaaaaaattgtaggcactacggacagaaaaagattttgacgtttccaacgtccacaa 108  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||    
T  12863981 gagatgaaacgggcaccgaagtaacagttggaacctgagtcgttaaaaaattgtaggctctacgaacagaaaaagattttgatgttgccaacgtccacaa 12864080  T
Q  109 ccatttatcatc--tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccg---ccaa 203  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||   ||||    
T  12864081 ccatttatcatcattattaacctgcaaagtaacattttgaagcaataatacgaattcccccaccaactcctcctcccacgcaaacaaactccgcctccaa 12864180  T
Q  204 cgccacgccccaccctccttctcccaacccaactgacacatatcaaagacatactcctcct 264  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  12864181 cgccacgccccaccctcctcctcccaacccaactgacacatatcaaagaccgactcctcct 12864241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 12832006 - 12832266
Alignment:
Q  9 gagatgaaacgggcaccgaagtaacagttggaacataagtcgttaaaaaattgtaggcactacggacagaaaaagattttgacgtttccaacgtccacaa 108  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||     
T  12832006 gagatgaaacgagcaccgaagtaacagttggaacctgagtcgttaaaaaattgtaggctctacgaacagaaaaagattttgatgtttccaacgtccacag 12832105  T
Q  109 ccatttatcatc--tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaact---ccgccaa 203  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||   || ||||    
T  12832106 ccatttatcatcattattaacctgcaaagtaacattttgaagcaataatacgaattcccccaccaactcctcctcccacgcaaacaaactccacctccaa 12832205  T
Q  204 cgccacgccccaccctccttctcccaacccaactgacacatatcaaagacatactcctcct 264  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||    
T  12832206 cgccacgccccaccctcctcctcccaacccaactgacacatatcaaagaccgactcctcct 12832266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 19315570 - 19315692
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccg---ccaacgccacgccccaccctcc 221  Q
    |||||| ||||| ||||| ||||||| ||| || | ||||||||||||||||||||||||||||| ||| |||||   ||| | ||||||| ||||||||    
T  19315570 aacctgaaaagtcacattgtgaagcagtaacataagttcccccaccaactcctcctcccacgcaaacaacctccgcctccacctccacgcctcaccctcc 19315669  T
Q  222 ttctcccaacccaactgacacat 244  Q
    | | ||||||| ||| |||||||    
T  19315670 tccccccaacctaacggacacat 19315692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 42457189 - 42457117
Alignment:
Q  129 tgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccgcc 201  Q
    |||||||| |||||||||||||||||    ||||||||||||  ||||||||||||||||| ||| |||||||    
T  42457189 tgcaaagtcacattttgaagcaataaacataattcccccacctgctcctcctcccacgcaaacaacctccgcc 42457117  T

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Target: chr7 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 41528992 - 41528748
Alignment:
Q  9 gagatgaaacgggcaccgaagtaacagttggaacataagtcgttaaaaaattgtaggcactacggacagaaaaagattttgacgtttccaacgtccacaa 108  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| |||||||| ||||||||  ||||||||||||||||    
T  41528992 gagatgaaacgggcatcgaagtaacagttggaacctgagtcgttaaaaaattgtaggcactacgaacagaaaatgattttgatatttccaacgtccacaa 41528893  T
Q  109 ccatttatcatc--tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccg---ccaa 203  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||   ||||    
T  41528892 ccatttatcatcattattaacctgcaaagtaacattttgaagcaataatatgaattaccccaccaactcctcctcccacgcaaacaaactccgtctccaa 41528793  T
Q  204 cgccacgccccaccctccttctcccaacccaactgacacatatcaaag 251  Q
    |||||||||||||||||   |||||||||||||| |||||||||||||    
T  41528792 cgccacgccccaccctc---ctcccaacccaacttacacatatcaaag 41528748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 50 - 272
Target Start/End: Original strand, 34704016 - 34704243
Alignment:
Q  50 gttaaaaaattgtaggcactacggacagaaaaagattttgacgtttccaacgtccacaaccatttatcatc--tattaacctgcaaagtaacattttgaa 147  Q
    ||||||| ||||||  | ||||| |||||||||| ||| || |||||||| ||||| || |||||||||||  | |||||||||||||||||| ||||||    
T  34704016 gttaaaagattgtatacgctacgaacagaaaaagctttagaagtttccaatgtccataatcatttatcatccttgttaacctgcaaagtaacaatttgaa 34704115  T
Q  148 gcaataatatgaattcccccaccaactcctcctcccacgcaagcaaact---ccgccaacgccacgccccaccctccttctcccaacccaactgacacat 244  Q
    ||| ||| ||||  ||||||||||||||||||||| | || | ||| ||    | ||| | ||||||||||||||||| | ||||||||||||||| |||    
T  34704116 gcagtaaaatgagctcccccaccaactcctcctccaaagctaacaacctatgtctccacctccacgccccaccctcctccccccaacccaactgactcat 34704215  T
Q  245 atcaaagacatactcctcctaaaacacc 272  Q
    |||||||||| ||||| ||| |||||||    
T  34704216 atcaaagacagactcccccttaaacacc 34704243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 121 - 201
Target Start/End: Original strand, 6724318 - 6724398
Alignment:
Q  121 tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccgcc 201  Q
    |||||||||||||| |||||||  |||||| |||| | | ||||||||||||||||||||||||||||| ||| |||||||    
T  6724318 tattaacctgcaaattaacattaagaagcagtaatttaatttcccccaccaactcctcctcccacgcaaacaacctccgcc 6724398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 247
Target Start/End: Original strand, 25392930 - 25393054
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccg---ccaacgccacgccccaccctcc 221  Q
    |||||||||||| ||||| ||||| | |||  | | |||||||||||||||||||||||| |||| ||| |||||   ||| | ||||| | ||||||||    
T  25392930 aacctgcaaagtcacattatgaagaagtaacctaagttcccccaccaactcctcctcccatgcaaacaacctccgtcaccacctccacgtctcaccctcc 25393029  T
Q  222 ttctcccaacccaactgacacatatc 247  Q
     ||  |||||| ||||||||||||||    
T  25393030 -tccaccaacctaactgacacatatc 25393054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 22583800 - 22583861
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacg 186  Q
    |||||| ||| | ||||||||||| |||||| | | ||||||||||||||| ||||||||||    
T  22583800 aacctggaaatttacattttgaagtaataatgtaagttcccccaccaactcatcctcccacg 22583861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 33136722 - 33136783
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacg 186  Q
    |||||||||||| |||||||||||||||||    |||||||||||   ||||||||||||||    
T  33136722 aacctgcaaagtcacattttgaagcaataaacataattcccccacggcctcctcctcccacg 33136783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 3927199 - 3927267
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaa 193  Q
    |||||||||||| |||||||||||||||||    ||||||||| ||  || |||||||||| |||||||    
T  3927199 aacctgcaaagttacattttgaagcaataaacataattcccccgcctgcttctcctcccacacaagcaa 3927267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 9840290 - 9840191
Alignment:
Q  92 gtttccaacgtccacaaccatttatcatc--tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaa 189  Q
    |||||||| ||||| ||||||||||||||  | |||||||||||||| ||||||||||||  ||| || | |||||||||||||||||||||||||||||    
T  9840290 gtttccaatgtccataaccatttatcatccttgttaacctgcaaagtcacattttgaagctgtaaaataagttcccccaccaactcctcctcccacgcaa 9840191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 49 - 198
Target Start/End: Original strand, 27708717 - 27708868
Alignment:
Q  49 cgttaaaaaattgtaggcactacggacagaaaaagattttgacgtttccaacgtccacaaccatttatcatc--tattaacctgcaaagtaacattttga 146  Q
    |||||||||||||||| ||||||  ||| |||| ||||  || |||||||| ||||| | |||| |||||||  || |||||||||||||| || | |||    
T  27708717 cgttaaaaaattgtagacactacaaacaaaaaatgattgagaagtttccaatgtccatagccatctatcatccttaataacctgcaaagtagcagtatga 27708816  T
Q  147 agcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactcc 198  Q
    |||  ||| || | ||||||||||||||||||||||||||||| ||| ||||    
T  27708817 agcggtaacataagttcccccaccaactcctcctcccacgcaaacaacctcc 27708868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 189
Target Start/End: Complemental strand, 39116968 - 39116842
Alignment:
Q  65 gcactacggacagaaaaagattttg-acgtttccaacgtccacaaccatttatcatc--tattaacctgcaaagtaacattttgaagcaataatatgaat 161  Q
    |||||||| |||||||| ||||||| | | |||||| ||||| | ||||||||||||  ||||||||||||| |||||||| ||||| | ||| || | |    
T  39116968 gcactacgtacagaaaa-gattttggaggattccaaagtccaaagccatttatcatccatattaacctgcaaggtaacattatgaagtagtaaaataagt 39116870  T
Q  162 tcccccaccaactcctcctcccacgcaa 189  Q
    ||||||||||| ||||||||||||||||    
T  39116869 tcccccaccaattcctcctcccacgcaa 39116842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 272
Target Start/End: Complemental strand, 30505203 - 30505059
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactccgccaacgccacgccccaccctccttc 224  Q
    |||||||||||| ||| | | ||||| ||| || | || ||||||||||||||||||| |||||| |||  ||||||    ||||||| | ||||||| |    
T  30505203 aacctgcaaagtcacagtataaagcagtaacataagtttccccaccaactcctcctccgacgcaaacaacatccgcct---ccacgcctccccctcctcc 30505107  T
Q  225 tcccaacccaactgacacatatcaaagacatactcctcctaaaacacc 272  Q
     ||||||| ||||||||||||||||| ||| ||||| ||| |||||||    
T  30505106 ccccaacctaactgacacatatcaaacacagactcccccttaaacacc 30505059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 27008735 - 27008671
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaa 189  Q
    |||||||||||| ||||| ||||| | |||||| | |||||||||||||||||||||||||||||    
T  27008735 aacctgcaaagtcacattatgaagtagtaatataagttcccccaccaactcctcctcccacgcaa 27008671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 2168110 - 2168167
Alignment:
Q  132 aaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaa 189  Q
    |||| |||||||||||| |||| | | | |||||||||||||||||| ||||||||||    
T  2168110 aaagaaacattttgaagtaatattctaagttcccccaccaactcctcttcccacgcaa 2168167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 121 - 272
Target Start/End: Complemental strand, 12687679 - 12687525
Alignment:
Q  121 tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaa---actccgccaacgccacgccccacc 217  Q
    |||||||||||||||||||||| ||||| ||||| ||||  ||||||||||||||||||||||||| || |||   || || ||| | ||||||||||||    
T  12687679 tattaacctgcaaagtaacattatgaagtaataaaatgaggtcccccaccaactcctcctcccacgtaaacaacctacgcctccatctccacgccccacc 12687580  T
Q  218 ctccttctcccaacccaactgacacatatcaaagacatactcctcctaaaacacc 272  Q
    |||||   |||| || ||||||| |||| | || ||| ||||| ||| |||||||    
T  12687579 ctcctcaccccaccctaactgactcataaccaaaacagactccgccttaaacacc 12687525  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 27104765 - 27104697
Alignment:
Q  121 tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaa 189  Q
    |||||||||||||||||| ||| ||||| ||||| || |  |||||||||||| |||||||||||||||    
T  27104765 tattaacctgcaaagtaaaattatgaagtaataaaataaggtcccccaccaacccctcctcccacgcaa 27104697  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 121 - 189
Target Start/End: Complemental strand, 27146574 - 27146506
Alignment:
Q  121 tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaa 189  Q
    |||||||||||||||||| ||| ||||| ||||| || |  |||||||||||| |||||||||||||||    
T  27146574 tattaacctgcaaagtaaaattatgaagtaataaaataaggtcccccaccaacccctcctcccacgcaa 27146506  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 17293342 - 17293414
Alignment:
Q  126 acctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagcaaactcc 198  Q
    ||||||||||| ||||||||||| |||||  | | ||||||||||||||| || |||||||||| ||| ||||    
T  17293342 acctgcaaagtcacattttgaagtaataacctaagttcccccaccaactcttcttcccacgcaaacaacctcc 17293414  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 10943665 - 10943610
Alignment:
Q  129 tgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctccca 184  Q
    |||||||| ||||||||||| |||||||| | ||||||||| |||| |||||||||    
T  10943665 tgcaaagtgacattttgaagtaataatataagttcccccactaactactcctccca 10943610  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 201
Target Start/End: Original strand, 31687005 - 31687114
Alignment:
Q  94 ttccaacgtccacaaccatttatcatc--tattaacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaagc 191  Q
    |||||| ||||||||||||||  ||||  ||| ||||||||||   ||||| ||||| ||||| || ||||| ||||||  ||||||||||||||||| |    
T  31687005 ttccaatgtccacaaccatttggcatccctatcaacctgcaaatgtacattatgaagtaataacattaattctcccacctcctcctcctcccacgcaaac 31687104  T
Q  192 aaactccgcc 201  Q
    || |||||||    
T  31687105 aacctccgcc 31687114  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 25845204 - 25845140
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaa 189  Q
    |||||||||||| ||||| ||||| |||||| | | |||  ||||||||||||||||||| ||||    
T  25845204 aacctgcaaagtgacattatgaagtaataatctaagttcgtccaccaactcctcctcccaagcaa 25845140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 189
Target Start/End: Original strand, 51346840 - 51346904
Alignment:
Q  125 aacctgcaaagtaacattttgaagcaataatatgaattcccccaccaactcctcctcccacgcaa 189  Q
    |||||||||||| | ||||||||| |||||   || ||||||||||  |||||||||||||||||    
T  51346840 aacctgcaaagtcatattttgaagtaataaacagagttcccccaccgcctcctcctcccacgcaa 51346904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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