View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14210_high_8 (Length: 471)
Name: NF14210_high_8
Description: NF14210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14210_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 411; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 463
Target Start/End: Original strand, 44980975 - 44981436
Alignment:
| Q |
1 |
attacgcatttgactacatgcgagaccatgattttaaatattgaattgaaaactttaaaacccatcaaagcaataccatctatatcagcaaaatttaata |
100 |
Q |
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| T |
44980975 |
attacgcatttgactacatgcgagaccatgattttaaatattgaattgaaaactttaaaacccatcaaagcaattccatctatatcagcaaaatttaata |
44981074 |
T |
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| Q |
101 |
attacaataagtctttattgatggtagcaattactataggataaacaaagtagtacaaaattcactgcagaaaaccaaagtgaaaatattcattatagat |
200 |
Q |
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| T |
44981075 |
attacaataagtctttattga-ggtagcaattactataggataaacaaagtagtacaaaattcactgcagaaaaccaaagtgaaaatattcattatagat |
44981173 |
T |
|
| Q |
201 |
gcagcccgcgtctgaaggataagaaataggaatcagacacataaaagccagaaaatgtggattcatgtccannnnnnnncctaaactagcaagaattcca |
300 |
Q |
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| T |
44981174 |
gcagcccgcatctgaaggataagaaatagaaatcagacacataaaagccagaaaatgtggattcatgtccatttttttccctaaactagcaagaattcca |
44981273 |
T |
|
| Q |
301 |
cgttcctactattaagatatttcttggcacaaaagtcatttgtttgtcaattttctattaataaacccaatttacccaataaataaagatgagaaagtag |
400 |
Q |
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| T |
44981274 |
cgttccttctattaagatatttcttggcacaaaagtcatttgtttgtcaattttctattaataaatccaatttacccaataaataaagatgagaaagtag |
44981373 |
T |
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| Q |
401 |
cataatacattttgatatatttcttcttgccaatcaccaccatttggttgtccggtctgtgct |
463 |
Q |
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| T |
44981374 |
cataatacattttgatatatttcttcttgccaatcaccaccatttggttgtccggtctgtgct |
44981436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 292 - 447
Target Start/End: Original strand, 44980133 - 44980289
Alignment:
| Q |
292 |
agaattccacgttcctactattaagatatttcttggcacaaaa-gtcatttgtttgtcaattttctattaataaacccaatttacccaataaataaagat |
390 |
Q |
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| T |
44980133 |
agaattccatgttcctactattaagatatttctcggcataaaaagccatttatttgacaattttcagttgataaacccaattttcccaagaaataaagat |
44980232 |
T |
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| Q |
391 |
gagaaagtagcataatacattttgatatatttcttcttgccaatcaccaccatttgg |
447 |
Q |
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| T |
44980233 |
aagaaagtagcataataccttttgatatacttcttcttgccaatcacccccacttgg |
44980289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 292 - 463
Target Start/End: Original strand, 44965051 - 44965224
Alignment:
| Q |
292 |
agaattccacgttcctactatta--agatatttcttggcacaaaagtcatttgtttgtcaattttctattaataaacccaatttacccaataaataaaga |
389 |
Q |
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| T |
44965051 |
agaattccatgttcctactattataaaataattcttagcacaaaagccatttgtttgaaaattttctgttgttcaacccaatttacccaagaaataaagt |
44965150 |
T |
|
| Q |
390 |
tgagaaagtagcataatacattttgatatatttcttcttgccaatcaccaccatttggttgtccggtctgtgct |
463 |
Q |
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| T |
44965151 |
tgagaaagtagcatattactttttgatacacttcttcttgccaatcacccccacttgtctgtccagtctgtgct |
44965224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 311 - 463
Target Start/End: Original strand, 44992801 - 44992953
Alignment:
| Q |
311 |
attaagatatttcttggcacaaaagtcatttgtttgtcaattttctattaataaacccaatttacccaataaataaagatgagaaagtagcataatacat |
410 |
Q |
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| T |
44992801 |
attaagataaatctgggcacaaaagccatatatttgacaattttcagttgataaacccaatttgcccaagaaataaagatgagaaagtagcataatactt |
44992900 |
T |
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| Q |
411 |
tttgatatatttcttcttgccaatcaccaccatttggttgtccggtctgtgct |
463 |
Q |
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| T |
44992901 |
tttgatatacttcttcttgccaatcactcccacttggctgtccagtatgtgct |
44992953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 44979202 - 44979244
Alignment:
| Q |
40 |
attgaattgaaaactttaaaacccatcaaagcaataccatcta |
82 |
Q |
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| T |
44979202 |
attgaattgaaaacttcaaaactcatcaaatcaataccatcta |
44979244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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