View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14211_high_10 (Length: 271)
Name: NF14211_high_10
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14211_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 17 - 254
Target Start/End: Complemental strand, 44130508 - 44130273
Alignment:
| Q |
17 |
atgtggagggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaaagggnnnnnnnnnnnnnnnnataga |
116 |
Q |
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| T |
44130508 |
atgtggagggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaagggggagagagagagaga--ataga |
44130411 |
T |
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| Q |
117 |
gctatcaattactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130410 |
gctatcaattactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactac |
44130311 |
T |
|
| Q |
217 |
gacctcacccaacaacaatcatcattattccttcacct |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
44130310 |
gacctcacccaacaacaatcatcattattccttcacct |
44130273 |
T |
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