View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14211_high_6 (Length: 428)
Name: NF14211_high_6
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14211_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 44450137 - 44449986
Alignment:
| Q |
91 |
ttttttgtgaaacttgtctttgtcaatcttaataaaaacaaaaacgagaagatattcatttatggaatattcatatcatttttatatatgtgaaagtctt |
190 |
Q |
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| T |
44450137 |
ttttttgtgaaacttgtctttgtcaatcttaataaaaacgaaaacgagaagatattcatttatgtagtattcatatcatttttatatatgtgaaagtctt |
44450038 |
T |
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| Q |
191 |
ttaaaagactagttatgaagtactcgtatcatttatggagtacaaagtactc |
242 |
Q |
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| T |
44450037 |
ttaaaagactaatgatggaatactcgtatcctttatggagtacaaaatactc |
44449986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 307 - 415
Target Start/End: Complemental strand, 44449921 - 44449813
Alignment:
| Q |
307 |
gccgatatatctctacacagccttttaaaatttcaatatttttgataatacacnnnnnnnaaggaatataatacactcttttaaaatctcaatctaagca |
406 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44449921 |
gccgatatatttctacacagccttttaaaatttcaatatttttgataatacattttttttaaggaatataatacactcttttaaaatctcaatctaagca |
44449822 |
T |
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| Q |
407 |
accaaagaa |
415 |
Q |
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| T |
44449821 |
accaaagaa |
44449813 |
T |
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