View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14211_high_8 (Length: 371)

Name: NF14211_high_8
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14211_high_8
NF14211_high_8
[»] chr2 (5 HSPs)
chr2 (67-190)||(24930535-24930658)
chr2 (250-371)||(25680227-25680348)
chr2 (250-371)||(24930718-24930842)
chr2 (1-111)||(25679998-25680108)
chr2 (142-190)||(25680119-25680167)


Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 24930535 - 24930658
Alignment:
Q  67 aatgatgcaagtaataacaattcaataaaattgtgatcattcttatctcacaacaaaacttgccatccttctcgttcaattgttctaacagggacgagtt 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24930535 aatgatgcaagtaataacaattcaataaaattgtgatcattcttatctcacaacaaaacttgccatccttctcgttcaattgttctaacagggacgagtt 24930634  T
Q  167 tgcaaactgttctacaatgatcac 190  Q
    ||||||||||||||||||||||||    
T  24930635 tgcaaactgttctacaatgatcac 24930658  T

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Target: chr2; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 250 - 371
Target Start/End: Original strand, 25680227 - 25680348
Alignment:
Q  250 ggtgccctataagatattccttttcttcttgaattggatttgcgtaatgaagatgacaagcgattaacacgaagcatactttcattgttgtcgtcgcctt 349  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25680227 ggtgccctataaggtattccttttcttcttgaattggacttgcgtaatgaagatgacgagcgattaacacgaagcatactttcattgttgtcgtcgcctt 25680326  T
Q  350 cttctttttcttcttcctcttc 371  Q
    ||||||||||||||||||||||    
T  25680327 cttctttttcttcttcctcttc 25680348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 250 - 371
Target Start/End: Original strand, 24930718 - 24930842
Alignment:
Q  250 ggtgccctataagatattccttttcttcttgaattggatttgcgtaatgaagatgacaagcgattaa---cacgaagcatactttcattgttgtcgtcgc 346  Q
    ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||  |||||||||   ||||||||||||||||||||||||||||||    
T  24930718 ggtgccctataaggtattccttttcttcttgaattggacttgcgtaatgaagatgatgagcgattaattacacgaagcatactttcattgttgtcgtcgc 24930817  T
Q  347 cttcttctttttcttcttcctcttc 371  Q
    |||||||||||||||||||||||||    
T  24930818 cttcttctttttcttcttcctcttc 24930842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 25679998 - 25680108
Alignment:
Q  1 gttaaatctttcaaccnnnnnnnccctctaagttactgatatcttccaacgtaacttttataaatgaatgatgcaagtaataacaattcaataaaattgt 100  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25679998 gttaaatctttcaaccaaaaaaaccctctaagttactgatatcttccaacgtaacttttataaatgaatgatgcaagtaataacaattcaataaaattgt 25680097  T
Q  101 gatcattctta 111  Q
    |||||||||||    
T  25680098 gatcattctta 25680108  T

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Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 25680119 - 25680167
Alignment:
Q  142 tcaattgttctaacagggacgagtttgcaaactgttctacaatgatcac 190  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25680119 tcaattgttctaacagggacgggtttgcaaactgttctacaatgatcac 25680167  T

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