View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14211_high_9 (Length: 327)
Name: NF14211_high_9
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14211_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 41339941 - 41340242
Alignment:
| Q |
11 |
caaaggctctacattcacctattgcaatgttgtcatcatcaaaacgcaacccacttgtcctttgtcgatgatgcggttaatctgatgatctgatcccaca |
110 |
Q |
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| T |
41339941 |
caaaggctctacattcacctattgcaatgttgtcatcatcaaaatgtaacccacttgtcctttgtcgatgatgcggttaatctgatgatctgatcccaca |
41340040 |
T |
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| Q |
111 |
ttgacaatgtcctgtagaaaagctactaacttgtcgcaccacttcttcgcaagtgccaattcaccggtcaatttatcgttgtcnnnnnnnaatcttttgt |
210 |
Q |
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| T |
41340041 |
ttgacaatgtcctgtagaaaagctactaacttgtcgcaccacttcttcgcaagtgccaattcaccggtcaatttatcgttgtctttttttaatcttttgt |
41340140 |
T |
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| Q |
211 |
tctca-tggataaatccgggcaatccatctgtcccctattgaaattctggttggctaattcccatgagtataggttccaacaattattcttcaggttcat |
309 |
Q |
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| T |
41340141 |
tctcactggataaatccgggcaatccatctgtcccctattgaaattctggttggctaattcccatgagtataggttccaacaattattcgtcaggttcat |
41340240 |
T |
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| Q |
310 |
ga |
311 |
Q |
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|| |
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| T |
41340241 |
ga |
41340242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 11 - 225
Target Start/End: Original strand, 36137485 - 36137712
Alignment:
| Q |
11 |
caaaggctctacattcacctattgcaatgttgtcatcatcaaaacgca---------------acccacttgtcctttgtcgatgatgcggttaatctga |
95 |
Q |
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| T |
36137485 |
caaaggctctacattcacctattgcaatattgtcatcatccaaacgcaccacgtcagggatggacccacttgtctcttgtcgatcatgcaattaatctga |
36137584 |
T |
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| Q |
96 |
tgatctgatcccacattgacaatgtcctgtagaaaagctactaacttgtcgcaccacttcttcgcaagtgccaattcaccggtcaatttatcgttgtcnn |
195 |
Q |
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| T |
36137585 |
t---ctggtcccacattgacaatgtcctgtagaaaagctactaacttgttgcactacttcttcgcaagtgccgattcacctttcaatttctcgttgtctt |
36137681 |
T |
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| Q |
196 |
nnnnnaatcttttgttctc-atggataaatc |
225 |
Q |
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| T |
36137682 |
tttttaatcttttgttctcaatggataaatc |
36137712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 311
Target Start/End: Original strand, 36137855 - 36137933
Alignment:
| Q |
233 |
tccatctgtcccctattgaaattctggttggctaattcccatgagtataggttccaacaattattcttcaggttcatga |
311 |
Q |
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| T |
36137855 |
tccatctgtcctcacttgaaattctagtaggcaaattcccatgtgcataggttccagcagttattggtcaggttcatga |
36137933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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