View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14211_low_16 (Length: 242)
Name: NF14211_low_16
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14211_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 33853189 - 33853403
Alignment:
| Q |
15 |
agttttctctctcataaattttcttattagagatttatctaatatgtctgacacttaatgtggatatttttcaaaacatataaaattcactaacatcgag |
114 |
Q |
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| T |
33853189 |
agttttctctctcataaattttcttattagagatttatctaatatgtctgacacttaatgtggatacttttcgaaagatataaaactcactaacatcgag |
33853288 |
T |
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| Q |
115 |
acaaacatgtctctctcaaatgttacattttttacttattcac---------aaaatttcaaacaacattaataaaattttgttaaaagaaatgtattgc |
205 |
Q |
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| T |
33853289 |
acaaacatgtctctcttaaatgttacattttttacttattcaccttaatgttaaaatttcaaacaatattaataaaa-tttgttaaaagaaatgtattgc |
33853387 |
T |
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| Q |
206 |
attaaaatagcttata |
221 |
Q |
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|||||||||||||||| |
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| T |
33853388 |
attaaaatagcttata |
33853403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 24 - 156
Target Start/End: Original strand, 33863868 - 33864000
Alignment:
| Q |
24 |
tctcataaattttcttattagagatttatctaatatgtctgacacttaatgtggatatttttcaaaacatataaaattcactaacatcgagacaaacatg |
123 |
Q |
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|||| |||| ||||||||||||||||||||||||||||| |||| ||||||| ||| || ||||||||||||||||||||||||||| |||||||||| |
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| T |
33863868 |
tctcttaaactttcttattagagatttatctaatatgtcctacacgtaatgtgaatacttctcaaaacatataaaattcactaacatcaagacaaacata |
33863967 |
T |
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| Q |
124 |
tctctctcaaatgttacattttttacttattca |
156 |
Q |
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| T |
33863968 |
tccttgtcaaatgttacatttttcacttattca |
33864000 |
T |
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