View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14211_low_18 (Length: 217)
Name: NF14211_low_18
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14211_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 54 - 200
Target Start/End: Original strand, 11412044 - 11412190
Alignment:
| Q |
54 |
gcatcccttgaattaatgatatgttgatgtacattcttgaaatattagagaaattctttctttattaagctgaaactaaatcattgtaggcctgacatca |
153 |
Q |
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| T |
11412044 |
gcatcccttgaattaatgatatgttgatgtacattcttgaaatattagagaaattctttctttattaagctgaaactaaatcattgtaggcctggcatca |
11412143 |
T |
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| Q |
154 |
agctttggctcaatataccaagtaagactaaaataagtgcatgtttg |
200 |
Q |
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| T |
11412144 |
agctttggctcaatataccaagtgagactaaaataagtgcatgtttg |
11412190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 54 - 196
Target Start/End: Complemental strand, 29521752 - 29521608
Alignment:
| Q |
54 |
gcatcccttgaattaatgatatgttgatgtacattcttgaaatattagagaaattctttctttattaagctgaaactaaatcattgtaggcc--tgacat |
151 |
Q |
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|||||||||||| ||||||| || |||||| ||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| | |||| |
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| T |
29521752 |
gcatcccttgaactaatgatgtgcagatgtagattcttgaaatattagagaaattatttctttatgaagctgagactaaatcattgtaggacatcaacat |
29521653 |
T |
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| Q |
152 |
caagctttggctcaatataccaagtaagactaaaataagtgcatg |
196 |
Q |
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| T |
29521652 |
caagctttagcttaatatatcaagtgagactaaaataagtgcatg |
29521608 |
T |
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