View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14211_low_5 (Length: 555)
Name: NF14211_low_5
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14211_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 14 - 539
Target Start/End: Complemental strand, 4242490 - 4241966
Alignment:
| Q |
14 |
aatataataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacaaatttcnnnnnnnnnnnnnnnnggtatggttgatg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
4242490 |
aatataataccagggtggaaatagtgcaataaggaattcaaaatgttacattcatgaaagttacgaatttcagaagaaaaaaaaaa-ggtatggttgatg |
4242392 |
T |
|
| Q |
114 |
gatattatgaggaccaagaatcattgcgttgaatatttcaaattgactagtgttgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagata |
213 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242391 |
gatattatgaggaccaagaatcattgtgttgaatatctcaaattgactagtgatgtggcaaaaataacgaccatgcataagtatgatgcacaaaaagata |
4242292 |
T |
|
| Q |
214 |
catgtgtgctgagaaagtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttct |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242291 |
catgtgtgctgagaaagtaaaaagcacacagattatgaatggctaacattacataaaacaggttttggaattatatcaacaattcatttccacattttct |
4242192 |
T |
|
| Q |
314 |
tttgtggtttgtgcgttaaatgaatgtttacgtatcaatggtcatgaatctctgctctacatgacctgtttacgtatcttttgttggctaattcgtgtgt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4242191 |
tttgtggtttgtgcgttaaatgaatgtttacatatcaatgctcatgaatctctgctctacatgacctgtttacatatcttttgttggctaattcgtgtgt |
4242092 |
T |
|
| Q |
414 |
ttacattggcttatcagtttgatcattcagcacttagcaggaaaaaggagcattaatctctgcattgtgcagttgtaagaagtaaagtcaagtaccattg |
513 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4242091 |
ttacattggcttatcagtttgatcactcagcacttggcaggaaaaaggagcattaatctctgcattgtgcagttgtaagaagtaaagtcaagtaccattg |
4241992 |
T |
|
| Q |
514 |
ttttggtgtacatgagggtgttcctt |
539 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
4241991 |
ttttggtgtacatgagggtgttcctt |
4241966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University