View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14211_low_6 (Length: 511)
Name: NF14211_low_6
Description: NF14211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14211_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 71 - 490
Target Start/End: Complemental strand, 38003106 - 38002688
Alignment:
| Q |
71 |
aatcagtaaaatggataagccaagaaatgtcgagtaagaaaggctcaagagtcgtagtgtgggttgaagtgccacaaacaatctaaataataacatgagc |
170 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38003106 |
aatcagtaaaatgtataaaccaagaaatgtcgagtaagaaaggctcaagagtcatagtgttggttgaagcgccacaaacaatctaaataataacatgag- |
38003008 |
T |
|
| Q |
171 |
taagaatcataattcacgataagagaagtaatacattgatcacatgcaagcttaataccgaattaa----agacccaaaaagctcagtaaaaatagcaat |
266 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
38003007 |
----aatcataatccacgataagagaagtaatacattgatcacatgcaagcttaataccgaattaattaaagaccccaaaagctcagtaaaaatagcaat |
38002912 |
T |
|
| Q |
267 |
gaaggttccaatatattacaatggaatcatttgatgaagctgtcaaatgaatctcagatgaagccaccgtagaacgaggagctaagcgaatgatgatatt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||| |
|
|
| T |
38002911 |
gaaggttccaatatattacaatggaatcctttgatgaagctgtcaaatgaatctcagatgaagtcactgcagaacgaggagctaagcgaatgatgatatt |
38002812 |
T |
|
| Q |
367 |
acgagagtcatcaacatttaatttatagtttgaaggaggggggagggtgccaatcaatatgaatttaaattttgatgttggtggaatataatggaatact |
466 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38002811 |
acgagagtcatcaacatttaatttatagtttgaaggaggggggagggtgccaatcaatatgaatttaaattttgatgttggtggaatataatggaatact |
38002712 |
T |
|
| Q |
467 |
atgggatgtgtcttgtatagtaag |
490 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
38002711 |
atgggatgtgtcttgtatagtaag |
38002688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 500
Target Start/End: Original strand, 36275938 - 36276057
Alignment:
| Q |
380 |
acatttaatttatagtttgaaggaggggggagggtgccaatcaatatgaatttaaattttgatgttggtggaatataatggaatactatgggatgtgtct |
479 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| ||||||||| | |||||||||||| || || |||| | |||||| || ||||||| |
|
|
| T |
36275938 |
acatttaatttatagaaagaaggaggggc-agggtgccaaacaatatgaaactcaattttgatgttagtagagtatatagaaatactgtgaattgtgtct |
36276036 |
T |
|
| Q |
480 |
tgtatagtaagatgaaccata |
500 |
Q |
| |
|
|| ||| ||||||| |||||| |
|
|
| T |
36276037 |
tgcataataagatggaccata |
36276057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University