View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14212_high_1 (Length: 1031)
Name: NF14212_high_1
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 464; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 439 - 1014
Target Start/End: Original strand, 26799729 - 26800302
Alignment:
| Q |
439 |
agaacaataatacatgtacaccttcatttcttctatacttacaagaatacttcannnnnnnctaagcaatatattccataaccctatctaagggtatttg |
538 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
26799729 |
agaacaataatacatgtccaccttcatttcttctacacttactagaatacttcatttttt-ctaagcaatatattccataaccctatctaagggtttttg |
26799827 |
T |
|
| Q |
539 |
gtgtccactaatctttttcccataataaatcatgaaagctactaattttatatacgtacgcactaaaatttaataaagaatagtatcttatgccaaacga |
638 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26799828 |
gtgtccactaatctttttcccataataaatcatgaaagctactaattttatatacgtacgcactaaaatttaataaagaatagtatcttatgccaaacga |
26799927 |
T |
|
| Q |
639 |
ataacttcaaattaagcacttttgttgaatannnnnnnngggggctatcatttcttcttgtacgtgttattcaaatatatcttttgaccgnnnnnnntca |
738 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26799928 |
ataacttcaaattaagcacttttgttgaatattttttttgggggctatcatttcttcttgtacgtgttattcaaatatatcttttgaccgaaaaaa-tca |
26800026 |
T |
|
| Q |
739 |
atcaaatattcttttctgacctgaaaatcaatcaaatattatcaacaacgaaaaacaaaccaatcaaattattatttatataagatactaagacatttaa |
838 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
26800027 |
atcaaatattcttttctgacctgaaaatcaatcaaatattatcaacaacgaaaaacaaaccaatcaaattattatttatataagatacttagacatttaa |
26800126 |
T |
|
| Q |
839 |
accataaccatccatccaattattctcacatatatatttacaaacaaaaagagcaaacaagactttgatttaatcacaaagacaaaattcaagagccatc |
938 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
26800127 |
accataaccatccatccaattattctcacatatatatttacaaacaaaaagagcaaacaagactctgatttaatcacaaagacaaaattcaagagctatc |
26800226 |
T |
|
| Q |
939 |
atcatcgtcattatggcttatccttatcaaccacaacaatatgcttctgcaccgccgatgccggcataccccactg |
1014 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
26800227 |
atcatcgtcattatggcttatccttatcaaccacagcaatatgcttctgcaccgccgatgccggcacaccccactg |
26800302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 221 - 429
Target Start/End: Original strand, 26799425 - 26799633
Alignment:
| Q |
221 |
gtcatttgataaggatctcctatccacatatagttcaacctacaaatcgtcatgagccgattatgttgtagcagccgcaccaaacaacgaattcgttcgg |
320 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26799425 |
gtcatttcataaggatctcctatccacatatagttcaacctgcaaatcgtcatgagccgattatgttgtagcagccgcaccaaacaacgaattcgttcgg |
26799524 |
T |
|
| Q |
321 |
caacccataacttccatacacgagaccaaggtgaatcaccaccaattcggttgaaaccacataatttctcataagcataagcaacaaaaaattacttgag |
420 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
26799525 |
caacccattacttccatacacgagaccaaggtgaatcaccaccaattcggttgaaaccacataacctctcataagcataagcaacaaaaaattacttgag |
26799624 |
T |
|
| Q |
421 |
accatttct |
429 |
Q |
| |
|
||||||||| |
|
|
| T |
26799625 |
accatttct |
26799633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 154; E-Value: 4e-81
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 26798754 - 26798958
Alignment:
| Q |
16 |
atactaaaaataacaaactaat--gagtataa-aatgcttatataacaaacaagtgaaacctccatcacaagctatatatttgcaagtgcatcggcacaa |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26798754 |
atactaaaaataacaaactaatatgagtaggacaatgcttatataacaaacaagtgaaacctccatcacaagctatatatttgcaagtgcatcggcacaa |
26798853 |
T |
|
| Q |
113 |
gcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaacctattgttgtttcca |
212 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
26798854 |
gcatttggttctatgtacgaatcacaaatttggaccttccaattcatatcgaacaactgtctaatatgttgcaataaactccaacctattgttgtttcct |
26798953 |
T |
|
| Q |
213 |
ctttc |
217 |
Q |
| |
|
||||| |
|
|
| T |
26798954 |
ctttc |
26798958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 108 - 196
Target Start/End: Original strand, 32057424 - 32057512
Alignment:
| Q |
108 |
cacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaa |
196 |
Q |
| |
|
||||| |||||| |||||||| ||||||||||||| |||||| | |||||||||| ||| ||||||||||| ||||||||||||||| |
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|
| T |
32057424 |
cacaaacattagcttctatgtgcgaatgacaaattcggacctcctaattcatatctaacggtcgtctaatatgttgcaataaactccaa |
32057512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 946 - 1002
Target Start/End: Original strand, 26805336 - 26805392
Alignment:
| Q |
946 |
tcattatggcttatccttatcaaccacaacaatatgcttctgcaccgccgatgccgg |
1002 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
26805336 |
tcatcatggcttatccttatcaaccacaaccatctgcctctgcaccgccgatgccgg |
26805392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 950 - 1002
Target Start/End: Original strand, 26824165 - 26824217
Alignment:
| Q |
950 |
tatggcttatccttatcaaccacaacaatatgcttctgcaccgccgatgccgg |
1002 |
Q |
| |
|
|||||||||||||| ||||||||||| || ||| ||||||||||||||||||| |
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|
| T |
26824165 |
tatggcttatccttgtcaaccacaaccatctgcctctgcaccgccgatgccgg |
26824217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 109 - 197
Target Start/End: Original strand, 13226807 - 13226895
Alignment:
| Q |
109 |
acaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaac |
197 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || || |||||||||||| |||||||||| |||||| | |||||||||||||| |
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|
| T |
13226807 |
acaagcattaacttctatgtacgaatgacgaatttagatctcccaattcatatccaacaaccgtcaaatatgttacaataaactccaac |
13226895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 67 - 217
Target Start/End: Complemental strand, 33004429 - 33004281
Alignment:
| Q |
67 |
tgaaacctccatcacaagctatatatttgcaagtgcatcggcacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaac |
166 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||| |||||| |||| ||||| |||| |||| |||||||||| ||||||| ||||||||| || ||| |
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|
| T |
33004429 |
tgaaacatccgtcacaagctatat--ttgcaagagcatcgacacatacattaacttctttgtaaaaatgacaaatctggacctcccaattcatgtctaac |
33004332 |
T |
|
| Q |
167 |
aaccgtctaatatgctgcaataaactccaacctattgttgtttccactttc |
217 |
Q |
| |
|
|||||| ||||||| ||||||||||| ||| |||||| || |||||||| |
|
|
| T |
33004331 |
aaccgtttaatatgttgcaataaactttaacatattgtcattcccactttc |
33004281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 218
Target Start/End: Complemental strand, 5199471 - 5199360
Alignment:
| Q |
107 |
gcacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaacctattgttg |
206 |
Q |
| |
|
|||||| |||||| |||| |||| |||||||||||| |||| | |||||||| | ||||||||||||||||| ||||||||||| |||| | |||| | |
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|
| T |
5199471 |
gcacaaacattagcttctctgtatgaatgacaaattcagacccccaaattcatacccaacaaccgtctaatatgttgcaataaacttcaacatgttgtcg |
5199372 |
T |
|
| Q |
207 |
tttccactttca |
218 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
5199371 |
tttccattttca |
5199360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 16240467 - 16240580
Alignment:
| Q |
88 |
tatatttgcaagtgcatcggcacaagcattaggttctatgtacgaatgacaaatttggaccttccaattcatatcaaacaaccgtctaatatgctgcaat |
187 |
Q |
| |
|
|||||||||||||| || |||||| |||||| || |||||||||||||||||| || ||||||| ||| | | |||||| ||| ||||||||||||| |
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|
| T |
16240467 |
tatatttgcaagtgtgtcagcacaaacattagcttttatgtacgaatgacaaatccaga-cttccaaatcaaacccaacaactgtcgaatatgctgcaat |
16240565 |
T |
|
| Q |
188 |
aaactccaacctatt |
202 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
16240566 |
aaactccaacatatt |
16240580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 51253451 - 51253393
Alignment:
| Q |
146 |
accttccaattcatatcaaacaaccgtctaatatgctgcaataaactccaacctattgt |
204 |
Q |
| |
|
|||| |||||||||||| ||||| |||||| ||| ||||||||||||||||||||||| |
|
|
| T |
51253451 |
acctcccaattcatatcgaacaatcgtctattatattgcaataaactccaacctattgt |
51253393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 118
Target Start/End: Original strand, 1881946 - 1882016
Alignment:
| Q |
46 |
aatgcttatataacaaacaagtgaaacctccatcacaagctatatatttgcaagtgcatcggcacaagcatta |
118 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||||||||| ||||||||||||||| || |||||||||||| |
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|
| T |
1881946 |
aatgctcatataacatcaaagtgaatcctccatcacaagc--tatatttgcaagtgcgtcagcacaagcatta |
1882016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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