View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14212_high_11 (Length: 378)

Name: NF14212_high_11
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14212_high_11
NF14212_high_11
[»] chr7 (3 HSPs)
chr7 (105-362)||(2799004-2799264)
chr7 (123-206)||(29150050-29150133)
chr7 (1-36)||(2799338-2799373)
[»] chr5 (3 HSPs)
chr5 (117-206)||(31759830-31759919)
chr5 (120-191)||(36019917-36019988)
chr5 (234-270)||(31759948-31759984)


Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 2799264 - 2799004
Alignment:
Q  105 tttgttgcaaggttgttatttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatttggtaactaacta 204  Q
    |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  2799264 tttgttgcaaggttgttatttcattgattaatgaaaatagaacaatacaatcaatttatatacacttaacttgtaatgcaagttattaggtaactaacta 2799165  T
Q  205 acttttcaaagataaaatcaaactaatgcaactaatttcac------tcatgattatggattaatcatctaataatttgaaagtaatatttttggcactt 298  Q
    ||||||||||  |||||||||||||||||||||||||||||      | ||||||||||||||||||||||||| ||||||||   ||| ||||||||||    
T  2799164 acttttcaaaagtaaaatcaaactaatgcaactaatttcacttatgattatgattatggattaatcatctaatactttgaaag---tatctttggcactt 2799068  T
Q  299 gttgcgaaaaactttgagtattgagaattgaagtaggaaaatattattttagttttaggcacta 362  Q
    || || || ||||||||||||||||| || |||||||| |  ||||||||||||||||| ||||    
T  2799067 gtagccaacaactttgagtattgagagttaaagtaggagacgattattttagttttaggtacta 2799004  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 29150050 - 29150133
Alignment:
Q  123 tttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatttggtaactaactaac 206  Q
    |||||||||||||||||||||||| | || |||| |||||||||||| ||||||| | | ||| ||||  |||||||| |||||    
T  29150050 tttcattgattaatgaaaatagaagagtacaatctatttatatacacataacttggagtacaaattatcaggtaactagctaac 29150133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2799373 - 2799338
Alignment:
Q  1 agcgcaactacatcgtttcttgcaattcgagcaatc 36  Q
    |||||| |||||||||||||||||||||||||||||    
T  2799373 agcgcagctacatcgtttcttgcaattcgagcaatc 2799338  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31759830 - 31759919
Alignment:
Q  117 ttgttatttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatttggtaactaactaac 206  Q
    |||||||||||||||||||||||||||||  | ||| | | |||||||||||| ||||||||| ||||||| |||| |||| ||||||||    
T  31759830 ttgttatttcattgattaatgaaaatagatgattaacaactatttatatacacataacttgtagtgcaagtcatttagtaaataactaac 31759919  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 36019988 - 36019917
Alignment:
Q  120 ttatttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatt 191  Q
    ||||||||||||||||||||| ||| | | || |||| |||||||||||| ||||||| | |||||||||||    
T  36019988 ttatttcattgattaatgaaattaggagagtacaatctatttatatacacataacttggagtgcaagttatt 36019917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 31759948 - 31759984
Alignment:
Q  234 aactaatttcactcatgattatggattaatcatctaa 270  Q
    |||||| |||||| |||||||||||||||||||||||    
T  31759948 aactaacttcactaatgattatggattaatcatctaa 31759984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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