View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_high_24 (Length: 202)
Name: NF14212_high_24
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 13 - 185
Target Start/End: Complemental strand, 48999704 - 48999532
Alignment:
| Q |
13 |
caaaggcggaatcgaagaagaaagaagagacattaacggagatgaagcatgtggttaaggatttacgtgaagaagactcgacgaagcggcgaatagcggc |
112 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| |
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| T |
48999704 |
caaatgcggaatcgaagaagaaagaagagacattaacggagatgaagcatgtggttaaggatttacgcggagaagactcgacaaagcggcgaatagcggc |
48999605 |
T |
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| Q |
113 |
ggcgagagtaagatcactgacgaaagaagattccgaagcgagaggctcactcgcaatgctcggggctatttct |
185 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48999604 |
agcgagagtaagatcactgacgaaagaagattccgaagcgagaggctcactcgcaatgctcggggctatttct |
48999532 |
T |
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