View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_high_3 (Length: 615)
Name: NF14212_high_3
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 518; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 1 - 596
Target Start/End: Original strand, 44343556 - 44344165
Alignment:
| Q |
1 |
gctctaacaggtggtgaaaatagagacaaactgctaataatattctcagtcaatatctgaaaagaaagcaagaaaagatgcggtgttgcagaacgcacag |
100 |
Q |
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| T |
44343556 |
gctctaacaggtggtgaaaatagagacaaactgctaataatattctcagtcaatatctgaaaagaaagcaagaaaagatgcggtgttgcagaacgcacag |
44343655 |
T |
|
| Q |
101 |
catgttgatcacctcttgcaaaccctccaagaacataagctagtggcaaaaacaagccaatagttgttccaacaataacatacattctgaacatgctact |
200 |
Q |
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| T |
44343656 |
catgttgatcacctcttgcaaaccctccaagaacataagctagtggcaaaaacaagccaatagttgttccaacaataatatacattctgaacatgctact |
44343755 |
T |
|
| Q |
201 |
tcctttgaaaatctcttgttgttgtgaatttgatgtagtagaaggagatgatggaaatgcgtaacgtgcaagtgctaagatgtatgcagaggcaagagct |
300 |
Q |
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| T |
44343756 |
tacttggaaaatctcttgttgttgtgaatttgatgtagtagaaggagatgatggaaatgcgtaacgtgcaagtgctaagatgtatgcagaggcaagagct |
44343855 |
T |
|
| Q |
301 |
ggaaaaactagatcaagaagaggaacaagaccacttgctgagaaaactaatatgaatgctacaagttgaagctctattacacgtaatgaacccatcattc |
400 |
Q |
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| T |
44343856 |
ggaaaaactagatcaagaagaggaacaagaccacttgctgagaaaactaatatgaatgctacaagttgaagctctattacacgtaatgaacccatcattc |
44343955 |
T |
|
| Q |
401 |
cacctgcagaaggtgcttctgatcgctggtttgcttttatgcctggagtttgtgg------------------tgctacagatacaccagacatcttctt |
482 |
Q |
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| T |
44343956 |
cacctgcagaaggtgcttctgatcgctggtttgcttttgtgcctggagtttgtggtgctgttggaggagctgttgctacagatacaccagacatcttctt |
44344055 |
T |
|
| Q |
483 |
ttcactgatcaaaggttaattaattagcaattagttcctgagttagtgtaccacattttattatgatagctaaatttaagaatatatataatgcatgcat |
582 |
Q |
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| T |
44344056 |
ttcactgatcaaaggttaattaattagcaattagttccttagttagtgtaccacattttattatgatagctaaatttaaga----atataatgcatgcat |
44344151 |
T |
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| Q |
583 |
gcatgcgtgcattt |
596 |
Q |
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| T |
44344152 |
gcatgcgtgcattt |
44344165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 39475151 - 39475241
Alignment:
| Q |
309 |
tagatcaagaagaggaacaagaccacttgctgagaaaactaatatgaatgctacaagttgaagctctattacacgtaatgaacccatcatt |
399 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||| || ||||||||||| || ||||||||||||||||||||||||||| |
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| T |
39475151 |
tagatcaagaagagggacaagaccacttgctgagaaaaccaatacaaaggctacaagttgtagttctattacacgtaatgaacccatcatt |
39475241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 182
Target Start/End: Original strand, 39474987 - 39475036
Alignment:
| Q |
133 |
acataagctagtggcaaaaacaagccaatagttgttccaacaataacata |
182 |
Q |
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||||||||||| ||||| ||||| |||| | ||||||||||||||||||| |
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| T |
39474987 |
acataagctagaggcaagaacaatccaagaattgttccaacaataacata |
39475036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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