View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_high_5 (Length: 543)
Name: NF14212_high_5
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 943908 - 943441
Alignment:
| Q |
1 |
atcgactcgtgcaaagccactgaactgattttgtttcagtagattagatataagtaggaggaatcagtagcatctaaggtgccgaactctttgtatgttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
943908 |
atcgactcgtgcaaagccactgaactgattttgtttcagtagattagatataagtaggagtaatcagtagcatctaaggtgccgaactctttgtatgttt |
943809 |
T |
|
| Q |
101 |
ctgtttcttgcctatgcattggaatgtcatctctatttatatgttccgattccacaaaattatttcaaatgaactgcaaagtgtaaacttatttgatttc |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
943808 |
ctgtttcttgccagtgcattggaatgtcatctctatttatatgttccgattccacaaaactatttcaaatgaactgcaaagtgtaaacttatttgatttc |
943709 |
T |
|
| Q |
201 |
tgtatctcaacacagattttggattctttgcagtctttccattcataggccggccgttggattagtccaattgaccaagagatctcgagaccgctctcga |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
943708 |
tgtatctcgacacagattttggattctttgcagtctttccattcagaggccggccgttggattagtccaattgaccaagagatctcgagaccgctctcga |
943609 |
T |
|
| Q |
301 |
catatgtatgtcacaagcttgtcaaagtgtaaacagctttaggtgatagctttgataaatggaatcttgtgcatgtgataaggattcgcannnnnnnnnn |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
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| T |
943608 |
catatgtatgtcacaagcttgtcaaagtgtaaacagctttaggtgatagctttaataaatggaatcttgtgcatgtgataaggattcacattttttgttt |
943509 |
T |
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| Q |
401 |
nnnnnnnnnctgaaaaggatcctcttttctttttctgtcacaagattcatgcttgtgcatcgcaaagc |
468 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
943508 |
gttgttttgctgaaaaggatccacttttctttttctgtcacaagattcatgcttgtgcatcgcaaagc |
943441 |
T |
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