View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_low_12 (Length: 378)
Name: NF14212_low_12
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 105 - 362
Target Start/End: Complemental strand, 2799264 - 2799004
Alignment:
| Q |
105 |
tttgttgcaaggttgttatttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatttggtaactaacta |
204 |
Q |
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| T |
2799264 |
tttgttgcaaggttgttatttcattgattaatgaaaatagaacaatacaatcaatttatatacacttaacttgtaatgcaagttattaggtaactaacta |
2799165 |
T |
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| Q |
205 |
acttttcaaagataaaatcaaactaatgcaactaatttcac------tcatgattatggattaatcatctaataatttgaaagtaatatttttggcactt |
298 |
Q |
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| T |
2799164 |
acttttcaaaagtaaaatcaaactaatgcaactaatttcacttatgattatgattatggattaatcatctaatactttgaaag---tatctttggcactt |
2799068 |
T |
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| Q |
299 |
gttgcgaaaaactttgagtattgagaattgaagtaggaaaatattattttagttttaggcacta |
362 |
Q |
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| T |
2799067 |
gtagccaacaactttgagtattgagagttaaagtaggagacgattattttagttttaggtacta |
2799004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 206
Target Start/End: Original strand, 29150050 - 29150133
Alignment:
| Q |
123 |
tttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatttggtaactaactaac |
206 |
Q |
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| T |
29150050 |
tttcattgattaatgaaaatagaagagtacaatctatttatatacacataacttggagtacaaattatcaggtaactagctaac |
29150133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2799373 - 2799338
Alignment:
| Q |
1 |
agcgcaactacatcgtttcttgcaattcgagcaatc |
36 |
Q |
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| T |
2799373 |
agcgcagctacatcgtttcttgcaattcgagcaatc |
2799338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 117 - 206
Target Start/End: Original strand, 31759830 - 31759919
Alignment:
| Q |
117 |
ttgttatttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatttggtaactaactaac |
206 |
Q |
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| T |
31759830 |
ttgttatttcattgattaatgaaaatagatgattaacaactatttatatacacataacttgtagtgcaagtcatttagtaaataactaac |
31759919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 191
Target Start/End: Complemental strand, 36019988 - 36019917
Alignment:
| Q |
120 |
ttatttcattgattaatgaaaatagaataataaaatcaatttatatacacttaacttgtaatgcaagttatt |
191 |
Q |
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| T |
36019988 |
ttatttcattgattaatgaaattaggagagtacaatctatttatatacacataacttggagtgcaagttatt |
36019917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 31759948 - 31759984
Alignment:
| Q |
234 |
aactaatttcactcatgattatggattaatcatctaa |
270 |
Q |
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| T |
31759948 |
aactaacttcactaatgattatggattaatcatctaa |
31759984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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