View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14212_low_13 (Length: 362)

Name: NF14212_low_13
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14212_low_13
NF14212_low_13
[»] chr1 (2 HSPs)
chr1 (1-80)||(8577310-8577389)
chr1 (76-152)||(8577578-8577653)
[»] chr6 (1 HSPs)
chr6 (252-301)||(31601867-31601916)


Alignment Details
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8577310 - 8577389
Alignment:
Q  1 ccaaactcttgtattgatcatatgcaatgacattagtcgaattgacaccaacatcatttcaagttggcctataagaagaa 80  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8577310 ccaaactcttgtatggatcatatgcaatgacattagtcgaattgacaccaacatcatttcaagttggcctataagaagaa 8577389  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 8577578 - 8577653
Alignment:
Q  76 aagaatagacatcggaccaaagctgaaaaaacacatcttaacttgcttgacgaagttagagagctaacacacataac 152  Q
    ||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  8577578 aagaatagatatcggaccaaagcagaagaa-cacatcttaacttgcttgacgaagttagagagctaacacacataac 8577653  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 31601867 - 31601916
Alignment:
Q  252 aaatatctatgtgatgtcttggaatgtcacacaccttaaattttatttca 301  Q
    |||||||||| ||| ||| ||||||| ||||||||| |||||||||||||    
T  31601867 aaatatctatttgaggtcatggaatgacacacacctcaaattttatttca 31601916  T

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