View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_low_14 (Length: 357)
Name: NF14212_low_14
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_low_14 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 14 - 357
Target Start/End: Complemental strand, 8261155 - 8260804
Alignment:
| Q |
14 |
ataatacttgatgtactctcttaaagaaacttgtttggcgatggtcaatcatacttagaccttgacttgttcctcataaccatattgcacgcaccaaata |
113 |
Q |
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| T |
8261155 |
ataatacttgatgtactctcttaaagaaaattgtttggcgatggtcaatcatacttagaccttgacttgttcctcataaccatattgcaggcaccaaata |
8261056 |
T |
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| Q |
114 |
agcaatgaaaaagacaaacgaaacaacattttgttttcaattaacaagtgcccaaagcagccacaaatga--------annnnnnnnnccaaagtggtcc |
205 |
Q |
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| T |
8261055 |
agcaatgaaaaagacaaacgaaacaacattttgattctaattaacaagtgttcaaagcagccacaaattattttttttatttttttttccaaagtggtcc |
8260956 |
T |
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| Q |
206 |
ctttatgttttccttgctcaccaagcaatttgactattatcagatctcatatgatatctataaatagatcaagttaactacatgaagttcaacctacaac |
305 |
Q |
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| T |
8260955 |
ctttatgttttccttggtcaccaagcaatttgactattatcatatctcatatgatatctataaatagatcaagttaactacatgaagttcaacctacaac |
8260856 |
T |
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| Q |
306 |
taaatcatttcagcttttcacacttccataaacagaaaaccctcttcaaagt |
357 |
Q |
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| T |
8260855 |
taaatcatttcagctttccacacttacataaacagaaaaccctcttcaaagt |
8260804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 8265874 - 8265771
Alignment:
| Q |
254 |
atatgatatctataaatagatcaagttaactacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataaacagaaaaccctcttca |
353 |
Q |
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| T |
8265874 |
atatgatgtctataaatggatcaagttaattacatgaagttcaacccacaactaaatcatttcagctttccacacttacataaacaagaaacccacttca |
8265775 |
T |
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| Q |
354 |
aagt |
357 |
Q |
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|||| |
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| T |
8265774 |
aagt |
8265771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 153 - 357
Target Start/End: Complemental strand, 8258915 - 8258698
Alignment:
| Q |
153 |
attaacaagtgcccaaagcagccacaaatgaannnnnnnnnccaaagtggtccc-tttatgttttccttgctcaccaagcaatttgactattatcagatc |
251 |
Q |
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| T |
8258915 |
attaacaagtgtccaaagcagccacaaatgaattttttt---caaagtggtcccatttaggttctgcttggtcgccaagcaatttgactatcatcatatc |
8258819 |
T |
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| Q |
252 |
tcatatgatat------------ctataaatagatcaagtta---actacatgaagttcaacctacaactaaatcatttcagcttttcacacttccataa |
336 |
Q |
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| T |
8258818 |
tcatatgatatgaaatgataactctataaatagatcaagttattaattacatgaagttcaacccacaactaaatcatttcagctttgcacacttacataa |
8258719 |
T |
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| Q |
337 |
acagaaaaccctcttcaaagt |
357 |
Q |
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||| ||||||| ||||||||| |
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| T |
8258718 |
acaaaaaacccacttcaaagt |
8258698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 242
Target Start/End: Complemental strand, 8265949 - 8265901
Alignment:
| Q |
195 |
caaagtggtccc-tttatgttttccttgctcaccaagcaatttgactat |
242 |
Q |
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| T |
8265949 |
caaagtggtcccatttatgttctccttggtcgccaagcaatttgactat |
8265901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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