View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14212_low_15 (Length: 320)

Name: NF14212_low_15
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14212_low_15
NF14212_low_15
[»] chr3 (15 HSPs)
chr3 (148-257)||(8260535-8260644)
chr3 (1-83)||(8260709-8260791)
chr3 (3-83)||(8265675-8265755)
chr3 (3-83)||(8258602-8258682)
chr3 (148-210)||(8350014-8350076)
chr3 (1-77)||(8350129-8350205)
chr3 (148-207)||(8258478-8258537)
chr3 (148-207)||(8265551-8265610)
chr3 (1-83)||(8352867-8352949)
chr3 (6-77)||(8252975-8253046)
chr3 (152-222)||(8334002-8334073)
chr3 (148-189)||(8352761-8352802)
chr3 (9-81)||(8356436-8356508)
chr3 (148-203)||(8252867-8252922)
chr3 (9-81)||(8360609-8360681)


Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 148 - 257
Target Start/End: Complemental strand, 8260644 - 8260535
Alignment:
Q  148 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaatctgcatccactttcttatcaagagactag 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260644 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgcagtattaatctgcatccactttcttatcaagagactag 8260545  T
Q  248 agcaatcgac 257  Q
    ||||||||||    
T  8260544 agcaatcgac 8260535  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8260791 - 8260709
Alignment:
Q  1 actttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8260791 actttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 8260709  T

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Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 8265755 - 8265675
Alignment:
Q  3 tttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 83  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8265755 ttttttatggctttgatttcatccttcttaagttgctttggccattctttagactcatcgtctcaagtttctgattatgat 8265675  T

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Target: chr3; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 3 - 83
Target Start/End: Complemental strand, 8258682 - 8258602
Alignment:
Q  3 tttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 83  Q
    ||||| |||||||||||||||||| | |||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  8258682 ttttttatggctttgatttcatccattttaagttgctttggccattcttcaaactcatcatctcaagtttctgattatgat 8258602  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 8350076 - 8350014
Alignment:
Q  148 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcatgca 210  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||    
T  8350076 gagctccaattatagtttcttatttccctgttaactattatccctcacgcttgtagtcatgca 8350014  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 8350205 - 8350129
Alignment:
Q  1 actttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgat 77  Q
    ||||||||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| |||||||||||||||    
T  8350205 actttttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat 8350129  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 8258537 - 8258478
Alignment:
Q  148 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcat 207  Q
    |||||||||||||||| | | ||||||||  |||||||||||||||||||||||||||||    
T  8258537 gagctccaattgtagtatatcatttccctactaactcttatctctcacgtttgtagtcat 8258478  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 8265610 - 8265551
Alignment:
Q  148 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtagtcat 207  Q
    |||||||||||||||| | | ||||||||| ||||||||||||||| |||||||||||||    
T  8265610 gagctccaattgtagtatatcatttccctgctaactcttatctctctcgtttgtagtcat 8265551  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 8352949 - 8352867
Alignment:
Q  1 actttttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatgat 83  Q
    ||||||||||||||||||||||||| || || | ||||||||| | |||||   ||||||| |||||||||| ||||||||||    
T  8352949 actttttgatggctttgatttcatcatttttcaattgctttggtccttcttcgaactcatcttctcaagtttatgattatgat 8352867  T

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Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 8253046 - 8252975
Alignment:
Q  6 ttgatggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgat 77  Q
    |||||||||||||||||||| ||||| | ||| ||||| | ||||| | ||||||| |||||||||||||||    
T  8253046 ttgatggctttgatttcatcattcttcaattgttttggtccttcttcaaactcatcttctcaagtttctgat 8252975  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 222
Target Start/End: Complemental strand, 8334073 - 8334002
Alignment:
Q  152 tccaattgtagtttcttatttccctgttaactcttat-ctctcacgtttgtagtcatgcagtattaatctgc 222  Q
    |||||||||||||||||||||||  ||||||| |||| | |||||| ||||||||| || ||||||||||||    
T  8334073 tccaattgtagtttcttatttcctcgttaactattatcccctcacgcttgtagtcaggcggtattaatctgc 8334002  T

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Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 189
Target Start/End: Complemental strand, 8352802 - 8352761
Alignment:
Q  148 gagctccaattgtagtttcttatttccctgttaactcttatc 189  Q
    ||||| |||||||||||||||||||||||||||||| |||||    
T  8352802 gagcttcaattgtagtttcttatttccctgttaactattatc 8352761  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 8356508 - 8356436
Alignment:
Q  9 atggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatg 81  Q
    ||||||||||||| | | ||||| | ||||||||| |  |||| | |||||||||||||||||||||||||||    
T  8356508 atggctttgattttaccgttcttcaattgctttggtctctcttcaaactcatcatctcaagtttctgattatg 8356436  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 8252922 - 8252867
Alignment:
Q  148 gagctccaattgtagtttcttatttccctgttaactcttatctctcacgtttgtag 203  Q
    |||||||||||| ||||||||||||| ||||||||  || ||||||||| ||||||    
T  8252922 gagctccaattgcagtttcttatttctctgttaacaattgtctctcacgcttgtag 8252867  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 8360681 - 8360609
Alignment:
Q  9 atggctttgatttcatccttcttaagttgctttggccattctttagactcatcatctcaagtttctgattatg 81  Q
    ||||||||||||||| | ||||| | |||||| || |  |||| | ||| |||||||||||||||||||||||    
T  8360681 atggctttgatttcagctttcttcaattgcttcggtctctcttcaaacttatcatctcaagtttctgattatg 8360609  T

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