View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_low_16 (Length: 304)
Name: NF14212_low_16
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_low_16 |
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| [»] scaffold0199 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 1888021 - 1888236
Alignment:
| Q |
10 |
gcagagaaaaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
109 |
Q |
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| T |
1888021 |
gcagagaaaaatccaagtgagctcctcctttcagttctagaggagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
1888120 |
T |
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| Q |
110 |
ccgagaacaatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggtaattgctgtgtgcttgaggcctctggaaca |
209 |
Q |
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| T |
1888121 |
ccgagaacaatgttgacgcttggcggcgtgcagcattttttgaagaaaccggtgagacttacaaaagggtaattgctgtgtgcttgaggcctctggaaca |
1888220 |
T |
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| Q |
210 |
acttgccacaagatta |
225 |
Q |
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||||||| |||||||| |
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| T |
1888221 |
acttgcctcaagatta |
1888236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 1670466 - 1670249
Alignment:
| Q |
10 |
gcagagaaaaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1670466 |
gcagagaaaaatccaagtgagctcctcctttcagttctacagcggagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggttt |
1670367 |
T |
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| Q |
110 |
ccgagaacaatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggtaattgctgtgtgcttgaggcctctggaaca |
209 |
Q |
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| T |
1670366 |
ccgagaacaatgttgacgcttggcggcgtgcggcaatttttgaaaaaaccggtcagacttacaaattggtaattgctgtgtgcttgaggcctttggaaca |
1670267 |
T |
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| Q |
210 |
acttgccacaagattacg |
227 |
Q |
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| T |
1670266 |
acttgcctcaagattacg |
1670249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 1891241 - 1891450
Alignment:
| Q |
18 |
aaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccgagaac |
117 |
Q |
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| T |
1891241 |
aaatccaagtgacctcctcctttcagctctggaggagagtaatccaacatctcttcttcgatatcatgcttatcttgacctctgtatggtttccgagaac |
1891340 |
T |
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| Q |
118 |
aatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggta---attgctgtgtgcttgaggcctctggaacaacttg |
214 |
Q |
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| T |
1891341 |
aatgttgatgcttggcggcgtgcggcattttttgaagaaaccggtgagacttac-aaagggtaattattgctgtgtgcttgaggcctctggaacaacttg |
1891439 |
T |
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| Q |
215 |
ccacaagatta |
225 |
Q |
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|| |||||||| |
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| T |
1891440 |
cctcaagatta |
1891450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 1891520 - 1891584
Alignment:
| Q |
227 |
gtgaagcacctagaagaactggattacttccaggtacatgtataa--ctattatttgtagattgt |
289 |
Q |
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| T |
1891520 |
gtgaagcacttagaagaactggattacttccaggtacatgtataactctattatttgtagattgt |
1891584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 1670181 - 1670117
Alignment:
| Q |
227 |
gtgaagcacctagaagaactggattacttccaggtacatgtataa--ctattatttgtagattgt |
289 |
Q |
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| T |
1670181 |
gtgaagcacatagaagaactggataacttccaggtacatgtataactctattatttgtagattgt |
1670117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 1888306 - 1888370
Alignment:
| Q |
227 |
gtgaagcacctagaagaactggattacttccaggtacatgtataa--ctattatttgtagattgt |
289 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
1888306 |
gtgaagcacatagaagaactggataacttccaggtacatgtataactctattattcgtagattgt |
1888370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 5996859 - 5997071
Alignment:
| Q |
18 |
aaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccgagaac |
117 |
Q |
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|||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5996859 |
aaatccaagtgagcacctcctttcagctctggaggagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccgagaac |
5996958 |
T |
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| Q |
118 |
aatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgagacctacaaaagggtaattgctgtgtgcttgaggcctctggaacaacttgcca |
217 |
Q |
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| T |
5996959 |
aatgttgatacttggcggcgtgcggcatttttcgaagaaacgggtgagacttacaaaagggtaattgctgtgtgcttgaggcctcttgaacaacttgcct |
5997058 |
T |
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| Q |
218 |
caagattacgtga |
230 |
Q |
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| |||||| |||| |
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| T |
5997059 |
cgagattaggtga |
5997071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 5997136 - 5997200
Alignment:
| Q |
227 |
gtgaagcacctagaagaactggattacttccaggtacatgtataa--ctattatttgtagattgt |
289 |
Q |
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||||||||| | ||||||||| || |||||||||||||||||| | |||||||||||||||||| |
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| T |
5997136 |
gtgaagcacgttgaagaactgtataacttccaggtacatgtatgattctattatttgtagattgt |
5997200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 230
Target Start/End: Complemental strand, 8356 - 8138
Alignment:
| Q |
13 |
gagaaaaatccaagtgagctcctcctttcagttctggagaagagtaatccaacatctcttcttcgatatcatgcttatcttgatctctgtatggtttccg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
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| T |
8356 |
gagaaaaatccaagtgagctcctcctttcagttctggagaagagtaacccaacatctcttctttgatatcatgcttatcttgatctctgtatggtctccg |
8257 |
T |
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| Q |
113 |
agaacaatgttgacgcttggcggcgtgcggcattttttgaagaaaccggtgaga-cctacaaaagggtaattgctgtgtgcttgaggcctctggaacaac |
211 |
Q |
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| T |
8256 |
agaacaatgttgacacttggcggtgtgcggcatttttcgaagaaaccggtgagattttacaaaagcgtaattgctgtgtgcttgaggcctttggaacaac |
8157 |
T |
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| Q |
212 |
ttgccacaagattacgtga |
230 |
Q |
| |
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||||| |||||||| |||| |
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| T |
8156 |
ttgcctcaagattaggtga |
8138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 289
Target Start/End: Complemental strand, 8068 - 8004
Alignment:
| Q |
227 |
gtgaagcacctagaagaactggattacttccaggtacatgtataa--ctattatttgtagattgt |
289 |
Q |
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||||||||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||| |
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| T |
8068 |
gtgaagcacatagaagaactggataacttccaggtacatgtacaactctattatttgtagattgt |
8004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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