View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_low_2 (Length: 729)
Name: NF14212_low_2
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_low_2 |
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| [»] chr4 (10 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 245 - 729
Target Start/End: Original strand, 2019716 - 2020184
Alignment:
| Q |
245 |
ccaaagatgcttatttaaatattggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatag |
344 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019716 |
ccaaagatgcttatttaaatattagggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaacttggtaacatgttagcatag |
2019815 |
T |
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| Q |
345 |
ggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttag |
444 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019816 |
ggaatttgttaatgaactaaattttgaaa----atattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaacttttag |
2019911 |
T |
|
| Q |
445 |
tttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatccaaactttaataattgctctaaatgccctatgagcgcatgttagctaaaccca |
544 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2019912 |
tttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatccaaactttaataattgctctaaatgccctatgagcacatgttagctaaaccca |
2020011 |
T |
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| Q |
545 |
aactttaaccattgctctaatagattcttacatctaacttctgttaagtctacattaaccattgagttaggttttgatttcgcggaatgtgaattgnnnn |
644 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2020012 |
aacttta-----------aatagattcttacatctaacttctgttaagtctacattaaccattgagttaggttttgatttcgcagaatgtgaattg-aaa |
2020099 |
T |
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| Q |
645 |
nnnttgtgatggagttgagaatggttttgttatatgttgaggtaaaaaatgttgataatttacgacgaaagcattgatataccgt |
729 |
Q |
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| T |
2020100 |
aaattgtgatggagttgagaatgtttttgttatattttggggtaaaaaatgttaatatttgacgacgaaagcattgatataccgt |
2020184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 326 - 595
Target Start/End: Original strand, 2036519 - 2036786
Alignment:
| Q |
326 |
tggtaacatgttagcatagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtctt |
425 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
2036519 |
tggtaatatgttagcatagggaatttgttaatgaactaaattttgaaacattatatgtgaaattgtatatttaatttcttgaaagtttacaaattgtctt |
2036618 |
T |
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| Q |
426 |
ttttatcacaaacttttagtttttattctttaacaagtgcccctaagtgcgcatgttagcaaaatccaaactttaataattgctctaaatgccctatgag |
525 |
Q |
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| T |
2036619 |
ttttaacacaaacttttaatttgtattctttaacaagtg-ccctaagagagcatgttagcaaaatcc-aactttaatcattgctctaagtgccctaagag |
2036716 |
T |
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| Q |
526 |
cgcatgttagctaaacccaaactttaaccattgctctaatagattcttacatctaacttctgttaagtct |
595 |
Q |
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| T |
2036717 |
cggatgttagcaatgcccaaacttcaatcattgctctaatagattcttacatctaacttctgttaagtct |
2036786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 2019480 - 2019652
Alignment:
| Q |
10 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
109 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019480 |
cgaacaatatctacgaaaatgctaacaatggagattaaatctcaaaacaccatggccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
2019579 |
T |
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| Q |
110 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
181 |
Q |
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| T |
2019580 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgtattcgggtatgataccaaagttggcaaatc |
2019652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 2036209 - 2036381
Alignment:
| Q |
10 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
109 |
Q |
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|||| |||||||| |||||||||||||||||| | |||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
2036209 |
cgaaaaatatctatgaaaatgctaacaatggagaataaatctcaaaacaccatggccaacaatatgctatcaaatgaaggtggtcccagcaataatctgc |
2036308 |
T |
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| Q |
110 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
181 |
Q |
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||||||||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2036309 |
ccgatcaaggtaagcatattttttctagggaattggtggttgtaatcgggtatgataccaaagttggcaaatc |
2036381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 1990514 - 1990686
Alignment:
| Q |
10 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaacaccatagccaacaatatgccatcaaatgaaggtggtcccaggaataatctgc |
109 |
Q |
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|||| ||||||| ||||||| |||||||||| | |||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
1990514 |
cgaaaaatatctttgaaaatggtaacaatggagaataaatctcaaaacaccatggccaacaatttgccatcaaatgaaggtggtcccagaaataatctgc |
1990613 |
T |
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| Q |
110 |
ccgatcaaggtaagcatgtgttttctggggaattggtggttgt-ttcgggtatgataccaaagttggcaaatc |
181 |
Q |
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||| ||||||||||||| |||||||| |||||||||||||||| ||| |||||||||||||||||||||||| |
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| T |
1990614 |
ccggtcaaggtaagcatatgttttctagggaattggtggttgtattcatgtatgataccaaagttggcaaatc |
1990686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 342 - 437
Target Start/End: Original strand, 1994504 - 1994599
Alignment:
| Q |
342 |
tagggaatttgttaatgaactaaattttgaaacattatattggaaatggtatatttaatttcttgagagtttacaaattgtcttttttatcacaaa |
437 |
Q |
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| T |
1994504 |
tagggaatgtgttaatgaactaaatattgaaacattatattggaaatggtgtatttcatttcttgaaattttttaaattatctttttcatcacaaa |
1994599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 1990745 - 1990805
Alignment:
| Q |
266 |
ttggggcatttgcaaagtattagcagaaattgagtgaagccttattttgttacttaaactt |
326 |
Q |
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| T |
1990745 |
ttggggcatttgcaaagaactagcagaaactgagtgtagccttattttgttacttaaactt |
1990805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 2036408 - 2036447
Alignment:
| Q |
245 |
ccaaagatgcttatttaaatattggggcatttgcaaagta |
284 |
Q |
| |
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| T |
2036408 |
ccaaagatgcttatttaaatattagggcatttgcaaagta |
2036447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 528 - 584
Target Start/End: Original strand, 1994641 - 1994697
Alignment:
| Q |
528 |
catgttagctaaacccaaactttaaccattgctctaatagattcttacatctaactt |
584 |
Q |
| |
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||||||||| | || |||||||||| ||||||||||||||||||| |||||||||| |
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| T |
1994641 |
catgttagcaagactcaaactttaatcattgctctaatagattctaccatctaactt |
1994697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 2022088 - 2022136
Alignment:
| Q |
10 |
cgaagaatatctacgaaaatgctaacaatggatattaaatctcaaaaca |
58 |
Q |
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|||| ||||||||||||||||||||||||||| | || ||||||||||| |
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| T |
2022088 |
cgaaaaatatctacgaaaatgctaacaatggagaatagatctcaaaaca |
2022136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 48204664 - 48204621
Alignment:
| Q |
17 |
tatctacgaaaatgctaacaatggatattaaatctcaaaacacc |
60 |
Q |
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| T |
48204664 |
tatctatgaaaatgctaacaatggagaataaatctcaaaacacc |
48204621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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