View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_low_4 (Length: 611)
Name: NF14212_low_4
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 14178222 - 14177760
Alignment:
| Q |
10 |
aagaatatatctcatatttcccaaatctgtcatggaaaactttccctttatagaatgcttgaaagtttcaaacatagtaacatcattttcagtatatatg |
109 |
Q |
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||||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14178222 |
aagaaaatatctcatatttcccaaatctgtcatagcaaactttccctttatagaatgcttgaaagtttcaaacacagtaacatcattttcagtatatatg |
14178123 |
T |
|
| Q |
110 |
agatcatccatataccagctaacaattaacagtttccctccagattcattcttaacaaataaggtgtcttcatgagagcatttcataaatttttcttgaa |
209 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
14178122 |
agatcatccatataccggctaacaattaacagtttccctccagattcattcttaacaaataaggtgtgttcatgagagcatttcataaatttttcttgaa |
14178023 |
T |
|
| Q |
210 |
taaagtaagattatgtcttagtgtacgtctcataccatacatagctttctttagtttgcataccacgcttgtatcatcattctgataacctaaagttagc |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
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| T |
14178022 |
taaagtaagattatgtcttagtgtacgtctcataccatacatagctttctttagtttgcatacctcgcttgtatcatcattctgataacctaaaggtagc |
14177923 |
T |
|
| Q |
310 |
tccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctgcaacagctagaatag |
409 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14177922 |
tccacatacatatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctgcaacagctagcatag |
14177823 |
T |
|
| Q |
410 |
ctcttattgtatcccatctagccataggagcaaaaacttttataacgactaaaagtcgaagaa |
472 |
Q |
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| T |
14177822 |
ctcttattgtatcccatctagccataggagcaaaaacttctataacgtcgaaaagttgaagaa |
14177760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 178 - 221
Target Start/End: Complemental strand, 20531305 - 20531262
Alignment:
| Q |
178 |
ttcatgagagcatttcataaatttttcttgaataaagtaagatt |
221 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
20531305 |
ttcatgagagcatttcataaaattttcttgagcaaagtaagatt |
20531262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 562 - 604
Target Start/End: Complemental strand, 14177670 - 14177628
Alignment:
| Q |
562 |
ttgagaggtaacgtgaaacaaaactgaaaagtgtgaaatgtaa |
604 |
Q |
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| T |
14177670 |
ttgagaggtaacgtgaaacaaaaacaaaaagtgtgaaatgtaa |
14177628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 278 - 428
Target Start/End: Original strand, 40610824 - 40610974
Alignment:
| Q |
278 |
ttgtatcatcattctgataacctaaagttagctccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatt |
377 |
Q |
| |
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||||||| || || || |||||||||| | |||||||||| |||||||||| | |||| |||| |||||| |||| || ||||| |||||||| || || |
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| T |
40610824 |
ttgtatcttccttttggtaacctaaaggttgctccacatagacatcttcaattaactctccatgcagaaaagcactcttgacatcaagctgatacacttt |
40610923 |
T |
|
| Q |
378 |
tcatcctttgcatgctgcaacagctagaatagctcttattgtatcccatct |
428 |
Q |
| |
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||||||||||| |||||||| ||||||| || ||| || || |||||||| |
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| T |
40610924 |
ccatcctttgcaagctgcaactgctagaagagttctgatggtgtcccatct |
40610974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 76 - 221
Target Start/End: Original strand, 3013022 - 3013167
Alignment:
| Q |
76 |
ttcaaacatagtaacatcattttcagtatatatgagatcatccatataccagctaacaattaacagtttccctccagattcattcttaacaaataaggtg |
175 |
Q |
| |
|
||||||||||| |||||||| | | || ||||| |||||||||| | | |||||| |||| || ||||||| |||| | |||||| ||||| ||||| |
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| T |
3013022 |
ttcaaacatagcaacatcatctcctgtgtatataagatcatccacaatcaggctaactattagcattttcccttcagagttattcttcacaaacaaggta |
3013121 |
T |
|
| Q |
176 |
tcttcatgagagcatttcataaatttttcttgaataaagtaagatt |
221 |
Q |
| |
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| |||||||||||||||||| || ||||||||| ||||||||||| |
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|
| T |
3013122 |
tgttcatgagagcatttcatgaaattttcttgagcaaagtaagatt |
3013167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 428
Target Start/End: Original strand, 46431724 - 46431839
Alignment:
| Q |
313 |
acatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctgcaacagctagaatagctc |
412 |
Q |
| |
|
||||| |||||||||||||| ||| |||| | ||| |||| || ||||||| |||||| ||||| || |||| || ||||||| || |||||| | || |
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| T |
46431724 |
acataaacatcttcaaccagttctccatgcaagaaagcactcttcacatctaactgatatacattccactctttacaagctgcaagagatagaatggttc |
46431823 |
T |
|
| Q |
413 |
ttattgtatcccatct |
428 |
Q |
| |
|
|||| ||||||||||| |
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|
| T |
46431824 |
ttatggtatcccatct |
46431839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 295 - 428
Target Start/End: Complemental strand, 20544480 - 20544347
Alignment:
| Q |
295 |
taacctaaagttagctccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaacatttcatcctttgcatgctg |
394 |
Q |
| |
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|||||||||| | ||||||||||||||||||||| | |||| |||| |||||| |||| || ||||| |||||||| || || || |||||||| |||| |
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| T |
20544480 |
taacctaaaggttgctccacatacacatcttcaattaactctccatgcagaaaagcactcttgacatcaagctgatacacgttccaacctttgcaagctg |
20544381 |
T |
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| Q |
395 |
caacagctagaatagctcttattgtatcccatct |
428 |
Q |
| |
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||| ||||||| || ||| || || |||||||| |
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| T |
20544380 |
caattgctagaagagttctgatggtgtcccatct |
20544347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 276 - 448
Target Start/End: Original strand, 5145062 - 5145234
Alignment:
| Q |
276 |
gcttgtatcatcattctgataacctaaagttagctccacatacacatcttcaaccagctctgcatgaagaaaaacacttttaacatctagctgataaaca |
375 |
Q |
| |
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||||||||| || |||| ||| ||||| | | |||| | ||| ||| |||||| ||||| |||||||||| || |||||||||| ||||||||||| |
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| T |
5145062 |
gcttgtatcttctttctaatagcctaagggttgctctagatatacaacttcaattagctcaccatgaagaaactcatttttaacatcaagctgataaacc |
5145161 |
T |
|
| Q |
376 |
tttcatcctttgcatgctgcaacagctagaatagctcttattgtatcccatctagccataggagcaaaaactt |
448 |
Q |
| |
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|| || ||||| |||||||||| |||| ||| | |||||| | |||||||| || ||||| ||||| |||| |
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|
| T |
5145162 |
ttccaacctttacatgctgcaattgctaaaattgttcttatggcgtcccatcttgctataggtgcaaatactt |
5145234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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