View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14212_low_5 (Length: 609)

Name: NF14212_low_5
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14212_low_5
NF14212_low_5
[»] chr7 (3 HSPs)
chr7 (1-277)||(2799768-2800032)
chr7 (279-338)||(2800263-2800319)
chr7 (127-201)||(29170174-29170248)
[»] chr1 (1 HSPs)
chr1 (8-147)||(26627997-26628136)
[»] chr4 (1 HSPs)
chr4 (21-171)||(12102731-12102881)
[»] chr6 (3 HSPs)
chr6 (11-132)||(21462636-21462757)
chr6 (29-171)||(11748952-11749094)
chr6 (336-416)||(21463187-21463267)
[»] chr2 (1 HSPs)
chr2 (1-147)||(18679390-18679536)
[»] chr3 (2 HSPs)
chr3 (9-127)||(32371738-32371856)
chr3 (283-386)||(32371253-32371356)
[»] chr8 (7 HSPs)
chr8 (9-201)||(18191686-18191878)
chr8 (51-174)||(30807352-30807475)
chr8 (36-141)||(25004499-25004604)
chr8 (327-408)||(30806892-30806973)
chr8 (331-388)||(18192234-18192291)
chr8 (65-117)||(1287604-1287656)
chr8 (65-117)||(43811311-43811363)
[»] chr5 (3 HSPs)
chr5 (129-232)||(36020534-36020637)
chr5 (65-117)||(12019566-12019618)
chr5 (65-117)||(37659504-37659556)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 2799768 - 2800032
Alignment:
Q  1 atcaaaagaagcatgtgatgtcttagccaaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatg 100  Q
    ||||||||||||||| ||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2799768 atcaaaagaagcatgggatatcttagtcaaatactatgaagacagtgacaatgtgaagcaagtgaagcttcaatcactaagaaggaaatatgaattgatg 2799867  T
Q  101 ttgatggaagaagatcaaagaatcaattattatttctcaaaattgctctgtatggtgaatcagatgaaggcatgcggtgaagatgttactgatcaacaag 200  Q
    |||||||||||||| |||||||||||| |||||||||| ||| || | |||             |||||||||||||||||||||||| |||| ||||||    
T  2799868 ttgatggaagaagaacaaagaatcaatgattatttctcgaaactgttatgt------------gtgaaggcatgcggtgaagatgttattgattaacaag 2799955  T
Q  201 tagcgggtaatgtcatgagatctttaacttcagagtatgatttcattgttgcagctatacaagatgccaaagatgtc 277  Q
    ||||||||||  |||||||||||||||||||| ||| |||||||||||||  ||||| || ||| ||||||||||||    
T  2799956 tagcgggtaagatcatgagatctttaacttcaaagtttgatttcattgttttagctagacgagaagccaaagatgtc 2800032  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 279 - 338
Target Start/End: Original strand, 2800263 - 2800319
Alignment:
Q  279 taacaatcagaacaagaagaaggattttgacaaaagaaagatttggtaatataattatga 338  Q
    |||||||||||||||||   |||||||||||||||||||||||||| ||||||| |||||    
T  2800263 taacaatcagaacaaga---aggattttgacaaaagaaagatttggcaatataactatga 2800319  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 127 - 201
Target Start/End: Complemental strand, 29170248 - 29170174
Alignment:
Q  127 ttattatttctcaaaattgctctgtatggtgaatcagatgaaggcatgcggtgaagatgttactgatcaacaagt 201  Q
    |||||||||||||| |||| ||  |||||||||||| ||||| |||||  |||| | ||||||||||||| ||||    
T  29170248 ttattatttctcaagattgatcactatggtgaatcaaatgaaagcatgtagtgatgttgttactgatcaataagt 29170174  T

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Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 26628136 - 26627997
Alignment:
Q  8 gaagcatgtgatgtcttagccaaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatgg 107  Q
    ||||| || ||| ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||    
T  26628136 gaagcttgggatatcttagcaaaatactatgaaggtagtgataatgtgaagcaagtgaagcttcagtcactgagaaggaagtatgagttgatgttgatgg 26628037  T
Q  108 aagaagatcaaagaatcaattattatttctcaaaattgct 147  Q
    |||| ||||||||||||||| |||| |||||  |||||||    
T  26628036 aagatgatcaaagaatcaatgattacttctcccaattgct 26627997  T

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Target: chr4 (Bit Score: 71; Significance: 7e-32; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 12102881 - 12102731
Alignment:
Q  21 tcttagccaaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatcaaag 120  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||| ||||| ||||||||||||||  | ||||||||    
T  12102881 tcttagcaaaatactatgaaggtagtgataatgtgaagcaagtgaagcttcagtcactaagaaggaagtatgagttgatgttgatggagaatgatcaaag 12102782  T
Q  121 aatcaattattatttctcaaaattgctctgtatggtgaatcagatgaaggc 171  Q
    ||||| | |||| ||||| || ||||  | | | |||||||||||||||||    
T  12102781 aatcagtgattacttctccaagttgcgatttgtagtgaatcagatgaaggc 12102731  T

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Target: chr6 (Bit Score: 66; Significance: 7e-29; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 11 - 132
Target Start/End: Original strand, 21462636 - 21462757
Alignment:
Q  11 gcatgtgatgtcttagccaaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatggaag 110  Q
    ||||| ||| |||| || |||||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| |||||||| |||||| |||||||||    
T  21462636 gcatgggatatcttggcaaaatactatgaaggtagtgataatgtgaagcaagtgaagcttcagtcattgagaagaaaatatgagttgatgatgatggaag 21462735  T
Q  111 aagatcaaagaatcaattatta 132  Q
    | |||||||| |||||| ||||    
T  21462736 atgatcaaaggatcaatgatta 21462757  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 171
Target Start/End: Complemental strand, 11749094 - 11748952
Alignment:
Q  29 aaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatcaaagaatcaatt 128  Q
    |||||||||||||| ||||| ||||||||||||||||||||||| ||| | |||||||||||||| ||||||||||||||  | |||||||| |||| |     
T  11749094 aaatactatgaaggtagtgagaatgtgaagcaagtgaagcttcagtcattaagaaggaaatatgagttgatgttgatggagcatgatcaaaggatcattg 11748995  T
Q  129 attatttctcaaaattgctctgtatggtgaatcagatgaaggc 171  Q
    ||||  |||  |||||||| | | | |||||||||||||||||    
T  11748994 attacatctacaaattgctatatgtagtgaatcagatgaaggc 11748952  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 416
Target Start/End: Original strand, 21463187 - 21463267
Alignment:
Q  336 tgagaagtttggtcattatgctgatgagcatcggcacaagaaagatggaaagaaaagtcataaaagtgaagaaaagacaaa 416  Q
    |||||| ||||| || |||||||||||   | ||||||||||||||||||||| || ||||||| ||||||||||| ||||    
T  21463187 tgagaaatttggacactatgctgatgaatgttggcacaagaaagatggaaagagaaatcataaaggtgaagaaaaggcaaa 21463267  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 18679536 - 18679390
Alignment:
Q  1 atcaaaagaagcatgtgatgtcttagccaaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatg 100  Q
    |||||| ||||| |||||| ||||||  ||||| |||||||| ||||| |||||||||||||||||| ||||||  | ||| || || ||||||  ||||    
T  18679536 atcaaaggaagcttgtgatatcttagagaaatattatgaaggaagtgagaatgtgaagcaagtgaagtttcaattcccgaggagaaagtatgaaccgatg 18679437  T
Q  101 ttgatggaagaagatcaaagaatcaattattatttctcaaaattgct 147  Q
     |||||||||||||||||||||||||| |||| |||  |||||||||    
T  18679436 atgatggaagaagatcaaagaatcaataattacttcataaaattgct 18679390  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 127
Target Start/End: Complemental strand, 32371856 - 32371738
Alignment:
Q  9 aagcatgtgatgtcttagccaaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatgga 108  Q
    ||||||| ||| ||||||| || ||||||||||| ||||| ||| |||||||||||||||| | |||||| || ||||| ||||| ||||||||||||||    
T  32371856 aagcatgggatatcttagcaaagtactatgaaggtagtgataatatgaagcaagtgaagctgcgatcactaaggaggaagtatgagttgatgttgatgga 32371757  T
Q  109 agaagatcaaagaatcaat 127  Q
     || |||||||| ||||||    
T  32371756 ggatgatcaaaggatcaat 32371738  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 386
Target Start/End: Complemental strand, 32371356 - 32371253
Alignment:
Q  283 aatcagaacaagaagaaggattttgacaaaagaaagatttggtaatataattatgagaagtttggtcattatgctgatgagcatcggcacaagaaagatg 382  Q
    ||||||||||||||||| |||||||| |  |||||||||  || ||| || | |||||||||||| ||||||| |||||||  | | |||||||||||||    
T  32371356 aatcagaacaagaagaaagattttgatacgagaaagattcagtgatacaactgtgagaagtttgggcattatgttgatgagtgttgtcacaagaaagatg 32371257  T
Q  383 gaaa 386  Q
    ||||    
T  32371256 gaaa 32371253  T

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Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 9 - 201
Target Start/End: Original strand, 18191686 - 18191878
Alignment:
Q  9 aagcatgtgatgtcttagccaaatactatgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatgga 108  Q
    ||||||| ||| |||| || || |||||||| || ||||| |||||||| |||||||||||||||||||| || || || ||||| ||||||||||||||    
T  18191686 aagcatgggatatcttggcaaagtactatgacggtagtgataatgtgaatcaagtgaagcttcaatcactaaggagaaagtatgagttgatgttgatgga 18191785  T
Q  109 agaagatcaaagaatcaattattatttctcaaaattgctctgtatggtgaatcagatgaaggcatgcggtgaagatgttactgatcaacaagt 201  Q
     || |||||||| |||| | ||||  |||  ||| |||  | | | |||||||||||||||||||| || ||||| ||  | |||||||||||    
T  18191786 ggatgatcaaaggatcagtgattacatcttcaaactgcaatctgtagtgaatcagatgaaggcatgtggagaagaagtgtcagatcaacaagt 18191878  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 30807475 - 30807352
Alignment:
Q  51 atgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatcaaagaatcaattattatttctcaaaattgctctg 150  Q
    |||| |||||||||||||||||| | ||||  ||||| |||||||||||| ||||||| ||| |||||||||||| |||| | || ||||||||||| |     
T  30807475 atgtaaagcaagtgaagcttcaacccctgatgaggaagtatgaattgatgatgatggacgaatatcaaagaatcatttatcacttatcaaaattgcttta 30807376  T
Q  151 tatggtgaatcagatgaaggcatg 174  Q
    | | ||||| |||||||| |||||    
T  30807375 tgtagtgaaccagatgaaagcatg 30807352  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 36 - 141
Target Start/End: Complemental strand, 25004604 - 25004499
Alignment:
Q  36 atgaaggcagtgacaatgtgaagcaagtgaagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatcaaagaatcaattattattt 135  Q
    |||| |||||||| || ||||| ||||||||||||||||| |||| ||| || | |||  | |||||||| ||||||||||||||| ||||| ||||  |    
T  25004604 atgatggcagtgagaaagtgaaacaagtgaagcttcaatctctgacaagaaagtttgagctaatgttgatagaagaagatcaaagagtcaatgattacct 25004505  T
Q  136 ctcaaa 141  Q
    ||||||    
T  25004504 ctcaaa 25004499  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 327 - 408
Target Start/End: Complemental strand, 30806973 - 30806892
Alignment:
Q  327 atataattatgagaagtttggtcattatgctgatgagcatcggcacaagaaagatggaaagaaaagtcataaaagtgaagaa 408  Q
    |||||||| |||||||| || ||| ||||||||||||  | |||| ||||||||| ||||||||| | ||||| ||||||||    
T  30806973 atataattgtgagaagtatgttcaatatgctgatgagtgttggcataagaaagattgaaagaaaaattataaaggtgaagaa 30806892  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 18192234 - 18192291
Alignment:
Q  331 aattatgagaagtttggtcattatgctgatgagcatcggcacaagaaagatggaaaga 388  Q
    |||| |||||||||||| || ||||||||||||    |||||||||||||||||||||    
T  18192234 aattgtgagaagtttggacactatgctgatgagtgctggcacaagaaagatggaaaga 18192291  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 1287604 - 1287656
Alignment:
Q  65 aagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatca 117  Q
    ||||||||||||||||||| ||||| |||  |||||| ||||||||| |||||    
T  1287604 aagcttcaatcactgagaaagaaatttgagctgatgtagatggaagatgatca 1287656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 117
Target Start/End: Complemental strand, 43811363 - 43811311
Alignment:
Q  65 aagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatca 117  Q
    ||||||||||| ||||||||||||| ||||||||||   |||||||| |||||    
T  43811363 aagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatca 43811311  T

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Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 129 - 232
Target Start/End: Original strand, 36020534 - 36020637
Alignment:
Q  129 attatttctcaaaattgctctgtatggtgaatcagatgaaggcatgcggtgaagatgttactgatcaacaagtagcgggtaatgtcatgagatctttaac 228  Q
    ||||||||||||||||||||| |   |||||||||||||| ||||  ||||||||||| ||  |||||||||||| ||||||  ||||||||||||||||    
T  36020534 attatttctcaaaattgctctatgcagtgaatcagatgaaagcatatggtgaagatgtaacatatcaacaagtagtgggtaagatcatgagatctttaac 36020633  T
Q  229 ttca 232  Q
    ||||    
T  36020634 ttca 36020637  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 12019566 - 12019618
Alignment:
Q  65 aagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatca 117  Q
    ||||||||||| ||||||||||||| ||||||||||   |||||||| |||||    
T  12019566 aagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatca 12019618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 37659504 - 37659556
Alignment:
Q  65 aagcttcaatcactgagaaggaaatatgaattgatgttgatggaagaagatca 117  Q
    ||||||||||| ||||||||||||| ||||||||||   |||||||| |||||    
T  37659504 aagcttcaatctctgagaaggaaatttgaattgatgcaaatggaagatgatca 37659556  T

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