View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_low_7 (Length: 499)
Name: NF14212_low_7
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 45177795 - 45177318
Alignment:
| Q |
18 |
ttttacttatatatgcattcggtggaaatttatacctcttaatatcactgatactagtaacatgattcctgcttcannnnnnnn--atgccgggtagctt |
115 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45177795 |
ttttacttatatatgcatttggtggaaatttatacctcttaatatcactgatactagtaacatgattcctgcttcattttttttttatgccgggtagctt |
45177696 |
T |
|
| Q |
116 |
tccttgagcttgtttgatcttatgtttttgtttt--gtcctctaattaagctattggtataatgcttcagataataatgtttacattgtcattggcggtg |
213 |
Q |
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||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
45177695 |
tccttgagcttgtttgatcttatgttttttttttttgtcctctaattaagctattggtataatgcttcagataataatgtttacattgtcattgtcggtg |
45177596 |
T |
|
| Q |
214 |
gctcgttttaggtcctcatttgttgttctagtccaacagtgcatttgttttcatgtcgatatgttttacttttgttcccatttacagaactttaaatgca |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177595 |
gctcgttttaggtcctcatttgttgttctagtccaacagtgcatttgttttcatgccgatatgttttacttttgttcccatttacagaactttaaatgca |
45177496 |
T |
|
| Q |
314 |
atttcactaatatttatgcccctcaatttcaggtaatttctgttattgagaaacgagcagatcaacttgactatgttcttgtggatactcccggtcagat |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
45177495 |
atttcactaatatttatgcccctcaatttcaggtaatttctgttattgagaaacgagcagatcaactggactatgttcttgtggatactcctggtcagat |
45177396 |
T |
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| Q |
414 |
tgagatattcacatggtcttcttccggtgctatcatcacagaagcttttgcctccacatttcccactgtagttgccta |
491 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45177395 |
tgagatattcacatggtctgcttccggtgctatcatcacagaagcttttgcctccacatttcccactgtagttgccta |
45177318 |
T |
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