View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14212_low_9 (Length: 406)
Name: NF14212_low_9
Description: NF14212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14212_low_9 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 45039559 - 45039154
Alignment:
| Q |
1 |
acattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039559 |
acattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaatg |
45039460 |
T |
|
| Q |
101 |
tcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039459 |
tcttcttctagctctttcaaacgttcttcaagttgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagt |
45039360 |
T |
|
| Q |
201 |
ttttagtttgtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039359 |
ttttagtttgtagcttctatccaatgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatcc |
45039260 |
T |
|
| Q |
301 |
aggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatctagtgtatccgaagtgtttcgaggc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039259 |
aggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctatttctctctgacattatgtgatctagtgtatccgaagtgtttcgaggc |
45039160 |
T |
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| Q |
401 |
ttcttc |
406 |
Q |
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|||||| |
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| T |
45039159 |
ttcttc |
45039154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 142 - 406
Target Start/End: Complemental strand, 45065054 - 45064792
Alignment:
| Q |
142 |
gtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagtttttagtttgtagcttctatccaatgataactactatataa |
241 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| || | ||||||| |||||| | | |||| ||||||||||||||||||||||| || |
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| T |
45065054 |
gtaattgatagcttccgttaccacatgaaccgtatcaatctacatagcctttagataatttttattgtatagcatctatccaatgataactactataaaa |
45064955 |
T |
|
| Q |
242 |
aaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagta |
341 |
Q |
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|| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| | |
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| T |
45064954 |
aa--ttactcattcatctaggtttaatataatatgttatagactaaccttcttcaatcctggtataaagctcgaaagttatatgatcttacttgtaagaa |
45064857 |
T |
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| Q |
342 |
gttgtctcctattcctctctgacattatgtgatctagtgtatccgaagtgtttcgaggcttcttc |
406 |
Q |
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|||||||| ||||||||||||||||||||||| ||| ||| || ||| | |||||||||||||| |
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| T |
45064856 |
gttgtctcatattcctctctgacattatgtgacctactgtctcataagcgcttcgaggcttcttc |
45064792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 142
Target Start/End: Complemental strand, 45065471 - 45065330
Alignment:
| Q |
1 |
acattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||| || | | ||||||||||||||| ||| | |||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
45065471 |
acattcttcagtgttcatttcacctatcgtagtgtctttgtcaattagtacatgggatcttgttatgttgctcattgatcctgcatctttcttcttaatg |
45065372 |
T |
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| Q |
101 |
tcttcttctagctctttcaaacgttcttcaagctgtttcatg |
142 |
Q |
| |
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| |||||| |||||||||||||| |||||||| ||||||||| |
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| T |
45065371 |
ttttcttcaagctctttcaaacgctcttcaagttgtttcatg |
45065330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 45083031 - 45083266
Alignment:
| Q |
1 |
acattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaatg |
100 |
Q |
| |
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|||||||| ||||||||||||||| |||||| |||| |||||| | | | ||||||||||||||||| |||||||||| ||| |||||||||| ||| |
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| T |
45083031 |
acattctttagtgttcatttcacccattgcagtgtcattgtcatcaaggagatgagatcttgttatggtgatcaatgatcccgcacctttcttcttgatg |
45083130 |
T |
|
| Q |
101 |
tcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagt |
200 |
Q |
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||||||||||||||||||| |||||||| ||| ||| || ||| |||| |||||| || ||||||||||| || ||||||||| ||||||||| |
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| T |
45083131 |
tcttcttctagctctttcacacgttcttgaagttgtgccacgtacttgacagcttctcctagtacatgaaccttgtccgtctacacagccattagataag |
45083230 |
T |
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| Q |
201 |
ttttagtttgtagcttctatccaatgataactactata |
238 |
Q |
| |
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| || ||| |||||||||||||||||||||||||||| |
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| T |
45083231 |
tctt--tttatagcttctatccaatgataactactata |
45083266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 276 - 403
Target Start/End: Original strand, 45083328 - 45083455
Alignment:
| Q |
276 |
attacatactaaccttcttcaatccaggtatcaaggccgaaagttctatgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatc |
375 |
Q |
| |
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|||||| |||||||||||||| ||||||||| || || ||||||||||||| ||| ||||||||| ||||||| |||||||||| ||||||||||| |
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| T |
45083328 |
attacagactaaccttcttcagtccaggtataaatgctgaaagttctatgaactttcttgtaagttcacgtctcctgttcctctctgttattatgtgatc |
45083427 |
T |
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| Q |
376 |
tagtgtatccgaagtgtttcgaggcttc |
403 |
Q |
| |
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||| || || |||| | |||||| |||| |
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| T |
45083428 |
tagcgtctcagaagcgcttcgagtcttc |
45083455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 29377312 - 29377084
Alignment:
| Q |
1 |
acattcttcagtgttcatttcaccgattgcaatgtctttgtcaattaaaacacgagatcttgttatggtgctcaatgatcctgcatctttcttcttaatg |
100 |
Q |
| |
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|||||||||||| ||||||||| | |||||| |||||||||||||||| | | | ||||||||||||||||||| ||| |||| |||||||| || || |
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| T |
29377312 |
acattcttcagttttcatttcatctattgcagtgtctttgtcaattaagatatgggatcttgttatggtgctcactgaccctgtgtctttctttttgata |
29377213 |
T |
|
| Q |
101 |
tcttcttctagctctttcaaacgttcttcaagctgtttcatgtaattgatagcttccgttaccacatgaaccttatcaatctacacagacattagatagt |
200 |
Q |
| |
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|||||| ||||| |||| | |||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
29377212 |
tcttctcctagccctttaacacgttcttcaagttgttttacgtaattgatagcttccgttaccacatgaaccttatcaatctacacaaccattagataat |
29377113 |
T |
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| Q |
201 |
ttttagtttgtagcttctatccaatgataac |
231 |
Q |
| |
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||||| |||||||||||||||||| ||||| |
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| T |
29377112 |
tttta--ttgtagcttctatccaattataac |
29377084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 224 - 405
Target Start/End: Complemental strand, 29376024 - 29375845
Alignment:
| Q |
224 |
atgataactactatataaaaatttactcattcatctaggtttaatataatatattacatactaaccttcttcaatccaggtatcaaggccgaaagttcta |
323 |
Q |
| |
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||||||||||||||| |||||||||||||| || ||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||| |
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| T |
29376024 |
atgataactactata--aaaatttactcatttgtcctggtttaatataatatattacaaactcaccttctttaatccaggtataaaggccgaaagttcta |
29375927 |
T |
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| Q |
324 |
tgatcttacttgtaagtagttgtctcctattcctctctgacattatgtgatctagtgtatccgaagtgtttcgaggcttctt |
405 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| || |||| | ||| ||||||||| |
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| T |
29375926 |
tgatcttccttgtaagtagctgtctcctattcctctctgacattatgtgatctagtgtctcagaagcgcttctaggcttctt |
29375845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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