View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14213_low_1 (Length: 443)
Name: NF14213_low_1
Description: NF14213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14213_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 14 - 321
Target Start/End: Original strand, 42909546 - 42909853
Alignment:
| Q |
14 |
aacctgtgaaccaaacatattttgtctcaataaaccagtgcttcttaaatcaatgtaagtttgtttttctttgaagaggcgacacaaagaaagaagagtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42909546 |
aacctgtgaaccaaacatattttgtctcaataaaccagtgcttcttaaatcaatgtaagtttgtttttctttgaagaggcgacacaaagaaagaagagtg |
42909645 |
T |
|
| Q |
114 |
gtagtttccttgtatctgctgatctgcagaggacacttatccaatggagaaacaatatatcgtttgagctctctcgtgttattcgatgcggagaatgctg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42909646 |
gtagtttccttgtatctgctgatctgcagaggacacttatccaatggagaaacgatatatcgtttgagctctctcgtgttattcgatgcggagaatgctg |
42909745 |
T |
|
| Q |
214 |
gagaccgaggtatcacgacgagattagttactttccctgctaataagaaaatagtttacactacttaattaatatatgtgcttttactcaatgtaaccac |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42909746 |
gagaccgaggtatcacgacgagattagttactttccctgctaataagaaaatagttaacactacttaattaatatatgtgcttttactcaatgtaaccac |
42909845 |
T |
|
| Q |
314 |
gcaatttc |
321 |
Q |
| |
|
|||||||| |
|
|
| T |
42909846 |
gcaatttc |
42909853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 385 - 427
Target Start/End: Original strand, 42909918 - 42909960
Alignment:
| Q |
385 |
gtagttagaaatttcaaattacatttttgaagatcgaatcttc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42909918 |
gtagttagaaatttcaaattacatttttgaagatcgaatcttc |
42909960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University