View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14213_low_2 (Length: 329)

Name: NF14213_low_2
Description: NF14213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14213_low_2
NF14213_low_2
[»] chr3 (2 HSPs)
chr3 (1-319)||(32424563-32424881)
chr3 (157-319)||(32450766-32450928)
[»] chr8 (1 HSPs)
chr8 (106-167)||(42678502-42678563)
[»] chr4 (1 HSPs)
chr4 (106-155)||(6986780-6986829)
[»] chr2 (1 HSPs)
chr2 (77-126)||(35226332-35226381)
[»] chr6 (1 HSPs)
chr6 (106-146)||(12117162-12117202)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 32424563 - 32424881
Alignment:
Q  1 tgaacacttaaaaagttatggtgaatgacatgtttattgtgttttatggagaatcaatgagttgtgacagtttttgttatatttatgaactatatactaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32424563 tgaacacttaaaaagttatggtgaatgacatgtttattgtgttttatggagaatcaatgagttgtgacagtttttgttatatttatgaactatatactaa 32424662  T
Q  101 atttgattaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcacatgaacaacagagtctcgggcagccagggtaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32424663 atttgattaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactcacatgaacaacagagtcccgggcagccagggtaa 32424762  T
Q  201 gaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacgttgaaccctctagctgaattattgttagctgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||    
T  32424763 gaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatgtcatcaatcacgttgaatcctctagctgaattattgttagcagc 32424862  T
Q  301 tgctgttttttctcctatg 319  Q
    |||||||||||||||||||    
T  32424863 tgctgttttttctcctatg 32424881  T

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Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 157 - 319
Target Start/End: Original strand, 32450766 - 32450928
Alignment:
Q  157 aacataactcacatgaacaacagagtctcgggcagccagggtaagaatatcagcacaggacacaacccctgggcatgctttttccacattggctttgatg 256  Q
    ||||||||| ||||||||||| |||||||| |||||||| | |||||||||||||||||||||||||   ||||||||||| |||||| |||||||||||    
T  32450766 aacataacttacatgaacaactgagtctcgagcagccagagcaagaatatcagcacaggacacaaccttggggcatgctttctccacactggctttgatg 32450865  T
Q  257 tcatcaatcacgttgaaccctctagctgaattattgttagctgctgctgttttttctcctatg 319  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  32450866 tcatcaatcacgttgaatcctctagctgaattattgttagctgctgctgttttctctcctatg 32450928  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 42678502 - 42678563
Alignment:
Q  106 attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaacaacataactca 167  Q
    |||||| |||| | ||||||||||| |||||||||||| || |||||||| |||||||||||    
T  42678502 attaactatctgatttgtttttgaaatttgatgtcaaaattgtgtcaaaataacataactca 42678563  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 6986780 - 6986829
Alignment:
Q  106 attaaccatctaaattgtttttgaattttgatgtcaaatttatgtcaaaa 155  Q
    |||||||||||||||| |||| ||| |||| |||| ||||||||||||||    
T  6986780 attaaccatctaaattattttcgaaatttgttgtctaatttatgtcaaaa 6986829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 126
Target Start/End: Original strand, 35226332 - 35226381
Alignment:
Q  77 ttatatttatgaactatatactaaatttgattaaccatctaaattgtttt 126  Q
    |||||||||| ||||||  ||| || ||||||||||||||||||||||||    
T  35226332 ttatatttattaactatcaactgaacttgattaaccatctaaattgtttt 35226381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 12117162 - 12117202
Alignment:
Q  106 attaaccatctaaattgtttttgaattttgatgtcaaattt 146  Q
    ||||||||| ||||||||| ||||| |||||||||||||||    
T  12117162 attaaccatataaattgttgttgaagtttgatgtcaaattt 12117202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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