View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14213_low_3 (Length: 319)
Name: NF14213_low_3
Description: NF14213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14213_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 8533611 - 8533886
Alignment:
| Q |
17 |
agaggtgaaatgaaatagtgtattttatattgtgtcctaaatatttatgtcaatgaacaactataccaaatcaacaaaaagtgttggtaaataccactta |
116 |
Q |
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| T |
8533611 |
agaggtgaaatgaaatagtgtattttatattgtatcctaaatatttatgtcaatgaacaactataccaaatcaactaaaagtgttgataaataccactta |
8533710 |
T |
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| Q |
117 |
aactcaggtatatatatcacttggggatccttaattcaaactcaaataaatgcgtccaactgggagcagattctctcatgtaatttgagagttcaatgaa |
216 |
Q |
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| T |
8533711 |
aactcaggtatatatatcactgggggatccttaattcaaactcaaatgaatgcgtccaactgggagcagattctctcatgtaacttgagagttcaatgag |
8533810 |
T |
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| Q |
217 |
atctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatattaatgttcact |
292 |
Q |
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| T |
8533811 |
atctaagccatttattttccactactccgtgcggagccttcaacattgaagtaattgaatggtattaatgttcact |
8533886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 219 - 292
Target Start/End: Original strand, 34639606 - 34639679
Alignment:
| Q |
219 |
ctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatattaatgttcact |
292 |
Q |
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| T |
34639606 |
ctaagccatttatttttcactactccatgtagggcccacaacattgatgtaattgaatggtattcatgatcact |
34639679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 8553193 - 8553247
Alignment:
| Q |
17 |
agaggtgaaatgaaatagtgtattttatattgtgtcctaaatatttatgtcaatgaa |
73 |
Q |
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| T |
8553193 |
agagatgaaatgaaatagtatattttata--gtgtcctagatatttatgtcaatgaa |
8553247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 31228541 - 31228438
Alignment:
| Q |
184 |
agattctctcatgtaatttgagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatatta |
283 |
Q |
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|||||||||| ||| ||| |||||| || ||| ||||||||||||||||||| |||||||| || | ||||||||| |||||||||||||||| |||| |
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| T |
31228541 |
agattctctcttgtgattggagagtccagtgagatctaagccatttattttctactactccatgtggagccctcaacgttgaagtaattgaatggtattg |
31228442 |
T |
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| Q |
284 |
atgt |
287 |
Q |
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|||| |
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| T |
31228441 |
atgt |
31228438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 277
Target Start/End: Original strand, 23861990 - 23862089
Alignment:
| Q |
177 |
tgggagcagattctctcatgtaatttgagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaat |
276 |
Q |
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||||||| ||||||||| ||| || |||||| |||||| ||||||||||||||||||| |||||||| || ||||| |||| |||||||||||||||| |
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| T |
23861990 |
tgggagctgattctctcctgtgatcggagagtccaatgagatctaagccatttattttctactactccatg-tgggccttcaatattgaagtaattgaat |
23862088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 179 - 290
Target Start/End: Complemental strand, 34313236 - 34313126
Alignment:
| Q |
179 |
ggagcagattctctcatgtaatttgagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatga |
278 |
Q |
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|||||||||||||| | ||||| ||||| |||| ||||||||| ||||||||||||| ||||| ||||||| ||||||| ||||| |||||||||| |
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| T |
34313236 |
ggagcagattctcttctataattgaagagtccaataaaatctaagtcatttattttccatcactccatgcaggg-cctcaacgttgaactaattgaatgg |
34313138 |
T |
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| Q |
279 |
tattaatgttca |
290 |
Q |
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|| ||||||||| |
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| T |
34313137 |
tactaatgttca |
34313126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 203 - 303
Target Start/End: Complemental strand, 7256841 - 7256741
Alignment:
| Q |
203 |
gagagttcaatgaaatctaagccatttattttccactactccgtgcagggccctcaacattgaagtaattgaatgatattaatgttcactggagtctctc |
302 |
Q |
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|||||| || ||| |||||||||||||||||||||||||| | || |||||||||||||||||||||||||| ||| |||| ||||| | |||||| |
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| T |
7256841 |
gagagtccagtgagatctaagccatttattttccactacttcatgggatgccctcaacattgaagtaattgaatggtatagatgtccactgcactctctc |
7256742 |
T |
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| Q |
303 |
c |
303 |
Q |
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| T |
7256741 |
c |
7256741 |
T |
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