View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14213_low_4 (Length: 272)
Name: NF14213_low_4
Description: NF14213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14213_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 20810371 - 20810135
Alignment:
| Q |
22 |
agtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagccc |
121 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20810371 |
agtcttgtcatgattttatttttccccaatgcaacaccatgaatcttctgctttatttcaaagagatctaaaagaagttgtttttgtaaagtaatagccc |
20810272 |
T |
|
| Q |
122 |
ctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
20810271 |
ctctactattattatcacaaacttctctaatactttcaacgaaacttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggt |
20810172 |
T |
|
| Q |
222 |
tgttttgcctgatccacccattccccatatccctatg |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810171 |
tgttttgcctgatccacccattccccatatccctatg |
20810135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 20836726 - 20836490
Alignment:
| Q |
22 |
agtcttgtcatgattttagttttcccccattcaacactatgaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagccc |
121 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20836726 |
agtcttgtcatgattttagttttccccaatgcaatactgtgaatcttctgttttatttcaaggagatctaaaagaagttgttcttgtaaagtaataaccc |
20836627 |
T |
|
| Q |
122 |
ctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggt |
221 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
20836626 |
ctccactattattatcacaaacttctctaatactttcaaggaaacttgttctaccctggaatctacgatggatttgattgtagagagctttggccgtggt |
20836527 |
T |
|
| Q |
222 |
tgttttgcctgatccacccattccccatatccctatg |
258 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20836526 |
tgttttgcctaatccacccattccccatatccctatg |
20836490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 58 - 257
Target Start/End: Complemental strand, 31174079 - 31173880
Alignment:
| Q |
58 |
ctatgaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatacttt |
157 |
Q |
| |
|
|||||||||| || ||||||| |||||||||||||||||||||| ||||||| |||| |||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
31174079 |
ctatgaatctcttgttttatttgcaggagatctaaaagaagttgttgttgtaaatgaataacccctctagaattattatcacaaacttctcgaatacttt |
31173980 |
T |
|
| Q |
158 |
caacgaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctat |
257 |
Q |
| |
|
||| ||||||||| ||||||| || ||||||||||||| |||||||| | |||||| ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
31173979 |
caaagaaacttgttctaccttcaaacctacgatggattttattgtagatagctttggctgtggttgttttcccggatccacccattccccatatccctat |
31173880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 58 - 257
Target Start/End: Original strand, 3400469 - 3400668
Alignment:
| Q |
58 |
ctatgaatcttctgctttatttcaaggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatacttt |
157 |
Q |
| |
|
|||||||||| || ||||||| | |||||||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
3400469 |
ctatgaatctcttgttttattttcaagagatctaaaagaagttgttgttgtaaaggaataacccctctattattattatcacaaacttctcgaatacttt |
3400568 |
T |
|
| Q |
158 |
caacgaaacttgtcctaccttggaatctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccatatccctat |
257 |
Q |
| |
|
| | |||||||| ||||| | |||||| | ||||||||||||||| | |||||| |||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
3400569 |
cgatgaaacttgctctacccttaaatctagaacggatttgattgtagatagctttggccgtggttgttttcccggatccacccattccccatatccctat |
3400668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 82 - 250
Target Start/End: Original strand, 8373600 - 8373768
Alignment:
| Q |
82 |
aggagatctaaaagaagttgttcttgtaaagtaatagcccctctactattattatcacaaacttctctaatactttcaacgaaacttgtcctaccttgga |
181 |
Q |
| |
|
||||||||| ||||||||||||| |||||| |||| |||| | ||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||| |
|
|
| T |
8373600 |
aggagatctgaaagaagttgttcctgtaaatgaataatcccttttctattataatcacaaacttctcgaatactttcaatgaaacttgttttaccctgga |
8373699 |
T |
|
| Q |
182 |
atctacgatggatttgattgtagagacctttggtcgtggttgttttgcctgatccacccattccccata |
250 |
Q |
| |
|
|| |||||||||| ||||||||| | |||||| | ||| ||||| || ||||||||||||||||||| |
|
|
| T |
8373700 |
attcacgatggattcgattgtagatagctttggccaaggtagttttcccggatccacccattccccata |
8373768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 32412971 - 32413011
Alignment:
| Q |
217 |
gtggttgttttgcctgatccacccattccccatatccctat |
257 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||||||| |
|
|
| T |
32412971 |
gtggttgttttacctgatccccccattccccaaatccctat |
32413011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University