View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14213_low_5 (Length: 266)
Name: NF14213_low_5
Description: NF14213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14213_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 14 - 208
Target Start/End: Original strand, 5352012 - 5352206
Alignment:
| Q |
14 |
ttctgtgctcatgaatgataggatatatgactgccaagaagaaactctgatttgtcaattttaccacatcctcattctcagactcaatgattatctttct |
113 |
Q |
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| T |
5352012 |
ttctgtactcatgaatgatagcatatatgactgccaagaagaaactctgatttgtcaattttaccacatcctcattctcagactcaatgattatctttct |
5352111 |
T |
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| Q |
114 |
caaagctcatttaatttgcttaaaaatcctgcaaccacatttatttttaaccaactttgtgcgacgagttcttggcaaatttctctccacgagtt |
208 |
Q |
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| T |
5352112 |
caaagctcatttaatttgcttaaaaatcctgcaaccacatttatttttaaccaactttgtgcgacgagttcttggcaaatttctctccacgagtt |
5352206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 5427328 - 5427538
Alignment:
| Q |
25 |
tgaatgataggatatatgactgccaagaagaaactctgatttgtcaattttaccacatcctcattctcagactcaatgattatctttctcaaagctcatt |
124 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5427328 |
tgaatgataggatatatggctgccaagaagaaactctgatttatcaattttaccacaacctcattctcagactcaatgattatctttctcaaagctcatt |
5427427 |
T |
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| Q |
125 |
taatttgcttaaaaatcctgcaaccacatttatttttaaccaactttgtgcgacgagttcttggcaaatttctctccacgagtttttatcatttgaagtg |
224 |
Q |
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||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
5427428 |
taatttgcttaaacatcctgcaacaacatttatttttaaccaactttgtgcgacgagttcttggcaaatttctctccatgagtttttatcatttaaagtg |
5427527 |
T |
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| Q |
225 |
gatggtctctg |
235 |
Q |
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| T |
5427528 |
gatggtctctg |
5427538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 137
Target Start/End: Original strand, 5334901 - 5335011
Alignment:
| Q |
25 |
tgaatgataggatatatgactgccaagaagaaactctgatttgtcaattttaccacatcctcattctcagactcaatgattatctttctcaaagctcatt |
124 |
Q |
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|||||||||||||||||| || ||||| | |||||||||||||| |||||| ||| | ||| |||||||||||||||||||||| ||| ||||| ||| |
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| T |
5334901 |
tgaatgataggatatatg-ctcccaagtaaaaactctgatttgtgaatttttccaaaaagtcaatctcagactcaatgattatcttgctc-aagcttatt |
5334998 |
T |
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| Q |
125 |
taatttgcttaaa |
137 |
Q |
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| T |
5334999 |
tcatttgcttaaa |
5335011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 5252930 - 5252874
Alignment:
| Q |
25 |
tgaatgataggatatatgactgccaagaagaaactctgatttgtcaattttaccaca |
81 |
Q |
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||||||||| |||||||| |||||||||||||||||| || ||| |||||||||||| |
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| T |
5252930 |
tgaatgatatgatatatgcctgccaagaagaaactctaatctgtgaattttaccaca |
5252874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 5100439 - 5100403
Alignment:
| Q |
31 |
ataggatatatgactgccaagaagaaactctgatttg |
67 |
Q |
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||||||||||| |||||||||||||||||||||||| |
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| T |
5100439 |
ataggatatatagctgccaagaagaaactctgatttg |
5100403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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