View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14213_low_6 (Length: 243)

Name: NF14213_low_6
Description: NF14213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14213_low_6
NF14213_low_6
[»] chr8 (1 HSPs)
chr8 (1-225)||(42197059-42197283)
[»] chr5 (3 HSPs)
chr5 (80-153)||(15074767-15074840)
chr5 (80-130)||(37588378-37588428)
chr5 (80-132)||(13604867-13604919)
[»] chr7 (1 HSPs)
chr7 (77-151)||(39505936-39506011)
[»] chr3 (5 HSPs)
chr3 (82-130)||(30322040-30322088)
chr3 (80-130)||(14548739-14548789)
chr3 (80-125)||(39311697-39311742)
chr3 (81-130)||(45535237-45535286)
chr3 (76-105)||(49465950-49465979)
[»] chr6 (1 HSPs)
chr6 (77-135)||(25100040-25100098)
[»] chr4 (2 HSPs)
chr4 (80-130)||(7694028-7694078)
chr4 (77-130)||(6466061-6466114)
[»] chr1 (1 HSPs)
chr1 (80-126)||(13837966-13838012)
[»] chr2 (3 HSPs)
chr2 (80-125)||(1939350-1939395)
chr2 (81-130)||(19629365-19629414)
chr2 (81-130)||(19826266-19826315)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 42197283 - 42197059
Alignment:
Q  1 aaggttgtatgagagtcaaatagattaaacatatttgatatttgtttagatttgcttatttgaacttattgcgagactattttcaacttatttccataaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42197283 aaggttgtatgagagtcaaatagattaaacatatttgatatttgtttagatttgcttatttgaacttattgcgagactattttcaacttatttccataaa 42197184  T
Q  101 ctcttgagtataacttatgaaaacaacttaaaactcatagaaacagtttgattttatctttctgttttaaaaataacttatacataaatgcttgattaag 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42197183 ctcttgagtataacttatgaaaacaacttaaaactcataaaaacagtttgattttatctttctgttttaaaaataacttatacataaatgcttgattaag 42197084  T
Q  201 ttgtagttagtttcatggtcaagac 225  Q
    |||||||||||||||||||||||||    
T  42197083 ttgtagttagtttcatggtcaagac 42197059  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 15074767 - 15074840
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaacaacttaaaactcatagaaacagtttgatt 153  Q
    |||||| ||||||||||||| || |  |||||||||||||||||||||||| | |||||  |||||||||||||    
T  15074767 ttttcagcttatttccataagctttccagtataacttatgaaaacaacttatagctcatgaaaacagtttgatt 15074840  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 37588378 - 37588428
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    |||||| ||||||||||||| ||||  || |||||||||||||||||||||    
T  37588378 ttttcagcttatttccataagctctccagaataacttatgaaaacaactta 37588428  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 13604867 - 13604919
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaacaacttaaa 132  Q
    |||||||||||||| ||||| ||||| |  |||||||||||||||| ||||||    
T  13604867 ttttcaacttattttcataagctcttcaagataacttatgaaaacagcttaaa 13604919  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 39506011 - 39505936
Alignment:
Q  77 ctattttcaacttatttccataaactcttgagtataacttatgaaaacaacttaaaactcata-gaaacagtttga 151  Q
    ||||||||| ||||||||||||||||||  || ||| ||||||||||||||||||  || ||| ||||||||||||    
T  39506011 ctattttcagcttatttccataaactctccagaatagcttatgaaaacaacttaatgcttatatgaaacagtttga 39505936  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 30322040 - 30322088
Alignment:
Q  82 ttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    ||||| |||||||||||| ||||| || |||||||||||||||||||||    
T  30322040 ttcaatttatttccataagctctttaggataacttatgaaaacaactta 30322088  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 14548739 - 14548789
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    |||||| ||||||||||||| ||||  || |||||||||||||||||||||    
T  14548739 ttttcagcttatttccataagctctccagaataacttatgaaaacaactta 14548789  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 39311697 - 39311742
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaaca 125  Q
    |||||| ||||||||||||||||||  |||||| ||||||||||||    
T  39311697 ttttcatcttatttccataaactctccagtatagcttatgaaaaca 39311742  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 45535237 - 45535286
Alignment:
Q  81 tttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||| ||||    
T  45535237 tttcaacttattttcataaactctccagtatagcttatgaaaacatctta 45535286  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 105
Target Start/End: Original strand, 49465950 - 49465979
Alignment:
Q  76 actattttcaacttatttccataaactctt 105  Q
    ||||||||||||||||||||||||||||||    
T  49465950 actattttcaacttatttccataaactctt 49465979  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 25100098 - 25100040
Alignment:
Q  77 ctattttcaacttatttccataaactcttgagtataacttatgaaaacaacttaaaact 135  Q
    |||||||||||||||||| |||| ||||| |  ||| ||||||||||||||||| ||||    
T  25100098 ctattttcaacttatttctataagctctttaagatagcttatgaaaacaacttataact 25100040  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 7694028 - 7694078
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    |||||| ||||||||||||||||||  || |||||||||||||||| ||||    
T  7694028 ttttcagcttatttccataaactctccaggataacttatgaaaacagctta 7694078  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 130
Target Start/End: Original strand, 6466061 - 6466114
Alignment:
Q  77 ctattttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    ||||||||||||||||||||||| ||||  || ||| |||||| ||||||||||    
T  6466061 ctattttcaacttatttccataatctctctagaatagcttatggaaacaactta 6466114  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 13837966 - 13838012
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaacaa 126  Q
    ||||||||||||||| |||||||||| || |||||||||||| ||||    
T  13837966 ttttcaacttatttctataaactcttcaggataacttatgaacacaa 13838012  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 125
Target Start/End: Original strand, 1939350 - 1939395
Alignment:
Q  80 ttttcaacttatttccataaactcttgagtataacttatgaaaaca 125  Q
    |||||||||||||||||||| ||||  |||||| ||||||||||||    
T  1939350 ttttcaacttatttccataagctctccagtatagcttatgaaaaca 1939395  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 19629414 - 19629365
Alignment:
Q  81 tttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||| ||||    
T  19629414 tttcaacttattttcataaactctccagtatagcttatgaaaacatctta 19629365  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 130
Target Start/End: Complemental strand, 19826315 - 19826266
Alignment:
Q  81 tttcaacttatttccataaactcttgagtataacttatgaaaacaactta 130  Q
    ||||||||||||| ||||||||||  |||||| |||||||||||| ||||    
T  19826315 tttcaacttattttcataaactctccagtatagcttatgaaaacatctta 19826266  T

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