View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14214_low_1 (Length: 378)
Name: NF14214_low_1
Description: NF14214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14214_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 22 - 378
Target Start/End: Complemental strand, 3939870 - 3939514
Alignment:
| Q |
22 |
cacagatgatttcattagcatttggtgcttcttatgtaaagccgaggaagatgtgctaattttcatggtctgcagcacttttgcattcttcaaaatgtac |
121 |
Q |
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| T |
3939870 |
cacagataatttcattagcatatggtgcttcttatgtaaaaccgaggaagatgtgctaattttcatggtctgaagcacttttgcattcttcaaaatatac |
3939771 |
T |
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| Q |
122 |
tcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttggtacagtctatggttcacccc |
221 |
Q |
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| T |
3939770 |
tcagcaaacagaagctcacagttgctgcctttataacctataagcgagcatgtccttaattgagaagaaagacattttggtacagtctgtggttcacccc |
3939671 |
T |
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| Q |
222 |
aatcgtgctaatccctttgacgttcataaagctgtcaaagaccacataagaagatcaggagattaaagtagagtttataaactaatcatcaatgtcataa |
321 |
Q |
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| T |
3939670 |
aatcgtgctcatccctttgacgttcataaagctgtcaaagaccacataagaagatcaggagattaaagtagagtttataaactaatcatcaatgtcataa |
3939571 |
T |
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| Q |
322 |
gtaaaaccttatgaagtgtaagatcttgaagcttagggcaatgctggagtaattcaa |
378 |
Q |
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| T |
3939570 |
gtaaaaccttttgaagtgtaagatcttgaagcttagggcaatgctggagtaattcaa |
3939514 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 84 - 174
Target Start/End: Complemental strand, 12652741 - 12652651
Alignment:
| Q |
84 |
tcatggtctgcagcacttttgcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgt |
174 |
Q |
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| T |
12652741 |
tcatggtgtggagtacttttgcattcttcaaaatgtactctgcaaactgaaactcggacttcatacctttataacctataagtgaacatgt |
12652651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 12486846 - 12486749
Alignment:
| Q |
104 |
gcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttgg |
201 |
Q |
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| T |
12486846 |
gcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgagaggaaaggcagtttgg |
12486749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 12508278 - 12508181
Alignment:
| Q |
104 |
gcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttgg |
201 |
Q |
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| T |
12508278 |
gcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgagaggaaaggcagtttgg |
12508181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 201
Target Start/End: Complemental strand, 12541006 - 12540909
Alignment:
| Q |
104 |
gcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgtccttaattgagaagaaagacattttgg |
201 |
Q |
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| T |
12541006 |
gcattcttcaaaacatactctgcaaactgaagctcacacttcatgcctttgtaatatataagcgagcatgttcttagttgagaggaaaggcagtttgg |
12540909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 15329409 - 15329505
Alignment:
| Q |
78 |
taattttcatggtctgcagcacttttgcattcttcaaaatgtactcagcaaacagaagctcgcacttgctgccttcataacctataagcgagcatgt |
174 |
Q |
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| T |
15329409 |
taattttcatggtgtgcaatacttttgcgttcttcaatatatactctacaaactgaagctcacatttcatgcctttataacctataatcgagcatgt |
15329505 |
T |
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