View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14215_low_4 (Length: 268)
Name: NF14215_low_4
Description: NF14215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14215_low_4 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 29973416 - 29973165
Alignment:
| Q |
17 |
atcatggaatatagaacaagtggtagaggagggatatcatgactttggagttgaatgggtggatatggatatgattacatcctttcaatttgatgatgga |
116 |
Q |
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| T |
29973416 |
atcatggaacattggacaagtggtagaggagggatatcatgactttggagttgaatgggtggatatggatatgatgacatcctttcaatttgatgatgga |
29973317 |
T |
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| Q |
117 |
agtaattggggagatgagaaggatgtgatgattgatcattttatggttgatgatgatgggtttgatatggaagagcatgcttacaattccttttggcaag |
216 |
Q |
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| T |
29973316 |
agtaattggggagatgagaaggatgtgatgattgatcattttatggttggtgatgatgggtttgatatggaagagcatgcttacaattccttttggcaag |
29973217 |
T |
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| Q |
217 |
atagttatgagatgggtttggtgcattgatttgttattgcttatgtgtagac |
268 |
Q |
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| T |
29973216 |
atagttatgagatagggttggtgcattaatttgttatggattatgtatagac |
29973165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 17 - 267
Target Start/End: Complemental strand, 29983312 - 29983050
Alignment:
| Q |
17 |
atcatggaatatagaacaagtggtagaggagggatatcatgactttggagttgaatgggtggatatggatatgattacatcctttcaatttgatgatgga |
116 |
Q |
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| T |
29983312 |
atcatggaacataggacaagtggtggaggagggatat---gactttggagttgaatgggtggatatggatttgataccatccttccaatttgatgatgga |
29983216 |
T |
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| Q |
117 |
agtaa---------------ttggggagatgagaaggatgtgatgattgatcattttatggttgatgatgatgggtttgatatggaagagcatgcttaca |
201 |
Q |
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| T |
29983215 |
agttgggaggctatagagtcttttggagatgagaaagaagtgatggttgatcatttaatggtttgtgatgatgggtatgatatgggagaacatgcttaca |
29983116 |
T |
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| Q |
202 |
attccttttggcaagatagttatgagatgggtttggtgcattgatttgttattgcttatgtgtaga |
267 |
Q |
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| T |
29983115 |
attccttttggcaagataattatgagattgggttggtgcattgatttgttattgcttatgtataga |
29983050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 29993050 - 29992812
Alignment:
| Q |
17 |
atcatggaatatagaacaagtggtagaggagggatatcatgactttggagttgaatgggtggatatggatatgattacatcctttcaatttgatgatgga |
116 |
Q |
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| T |
29993050 |
atcatggaacataggacaagtgatggaggaggga---caagactttggggttgagtgggtggatatggatttgatgacatccttccaatttgatgatgga |
29992954 |
T |
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| Q |
117 |
agt-------------aat--tggggagatgagaaggatgtgatgattgatcattttatggttgatgatgatgggtttgatatggaagagcatgcttaca |
201 |
Q |
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| T |
29992953 |
agttgggaagcaattgaatcttgtggacatgagaaagatgtgatggttgaccatttaatggtttgtgatgatgggtttgatatggaagaacatgcttaca |
29992854 |
T |
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| Q |
202 |
attccttttggcaagatagttatgagatgggtttggtgcatt |
243 |
Q |
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| T |
29992853 |
attccttttggcaagatagctatgagatggggttggtgcatt |
29992812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 128 - 250
Target Start/End: Complemental strand, 29978878 - 29978756
Alignment:
| Q |
128 |
agatgagaaggatgtgatgattgatcattttatggttgatgatgatgggtttgatatggaagagcatgcttacaattccttttggcaagatagttatgag |
227 |
Q |
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| T |
29978878 |
agatgagaaagatgtgatgcttgatcatttaatggtttgtgatgatgggtttgagatagaagaacatgcttacaattccttttggcaagataattatgag |
29978779 |
T |
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| Q |
228 |
atgggtttggtgcattgatttgt |
250 |
Q |
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| T |
29978778 |
attgggttggtgcattaatttgt |
29978756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 117
Target Start/End: Complemental strand, 29978982 - 29978904
Alignment:
| Q |
36 |
gtggtagaggagggatatcatgactttggagttgaatgggtggatatggatatgattacatcctttcaatttgatgatggaa |
117 |
Q |
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| T |
29978982 |
gtggtggaggagggatat---gactttggggtggaatgggtggatatggatttgatgccatccttccaatttgatgatggaa |
29978904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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