View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14215_low_6 (Length: 260)
Name: NF14215_low_6
Description: NF14215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14215_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 7258066 - 7257902
Alignment:
| Q |
1 |
taacctcagactttggaaggccaaagcatcagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacac----- |
95 |
Q |
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| T |
7258066 |
taacctcagactttggaaggccaaagcatcagaacaacttggagtagtaagttgattt-----------cattcatcctctttttttacacacacaaaaa |
7257978 |
T |
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| Q |
96 |
acnnnnnnnnnnnnnnctgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
171 |
Q |
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| T |
7257977 |
aaaaaaaaaaaaaaaactgtcatctattaattgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 7257862 - 7257802
Alignment:
| Q |
177 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatga |
237 |
Q |
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| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatga |
7257802 |
T |
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