View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_high_12 (Length: 281)
Name: NF14216_high_12
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 9551009 - 9550757
Alignment:
| Q |
21 |
gaaaaccttttcttttatggggatagaaaaccact------------attccctctattagatagctctaattttaatcaaaataaagtccccatataag |
108 |
Q |
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| T |
9551009 |
gaaaaccttttcttttatggggatagaaaaccactgtttcctctattattccctctattagatagctctaattttaatcaaaataaagtccccatataag |
9550910 |
T |
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| Q |
109 |
nnnnnnnnnnnnnnnnngttgaaaaccttccacataagttctcatattttagtaagaattgtcttagatttaaatgatcacaaaataatcatagatttaa |
208 |
Q |
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| T |
9550909 |
tttttctttt-------gttgaaaaccttccacataagttctcatattttagtaagaattgtcttagatttaaatgatcacaaaataatcatagatttaa |
9550817 |
T |
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| Q |
209 |
attttagataatataatatggcacctactacattagaattacgatatgaaatttctatat |
268 |
Q |
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| T |
9550816 |
attttagataatataatatggcacctactacattagaattacgatatgaaatttctatat |
9550757 |
T |
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