View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14216_high_16 (Length: 257)

Name: NF14216_high_16
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14216_high_16
NF14216_high_16
[»] chr4 (28 HSPs)
chr4 (24-257)||(7771069-7771302)
chr4 (1-257)||(7773983-7774242)
chr4 (24-257)||(7789754-7789987)
chr4 (24-257)||(7904697-7904931)
chr4 (1-257)||(7877385-7877644)
chr4 (1-257)||(7907990-7908252)
chr4 (1-257)||(7237877-7238133)
chr4 (5-257)||(7765286-7765538)
chr4 (1-254)||(7786111-7786364)
chr4 (1-257)||(7822634-7822890)
chr4 (11-158)||(7800401-7800548)
chr4 (11-158)||(7813244-7813391)
chr4 (206-257)||(48862906-48862960)
chr4 (206-257)||(45372419-45372470)
chr4 (205-257)||(48891074-48891126)
chr4 (205-257)||(49041499-49041551)
chr4 (205-257)||(50251169-50251221)
chr4 (211-255)||(33134190-33134237)
chr4 (205-257)||(48156788-48156840)
chr4 (211-257)||(7800302-7800348)
chr4 (211-257)||(7813145-7813191)
chr4 (208-257)||(45366582-45366634)
chr4 (28-102)||(50668869-50668943)
chr4 (206-251)||(37827356-37827401)
chr4 (209-257)||(48148047-48148098)
chr4 (205-257)||(48170947-48171002)
chr4 (181-257)||(48735649-48735728)
chr4 (205-257)||(49044590-49044642)
[»] chr1 (4 HSPs)
chr1 (206-257)||(24309842-24309893)
chr1 (206-257)||(24340079-24340130)
chr1 (25-55)||(24369356-24369386)
chr1 (212-257)||(24366820-24366865)
[»] chr8 (6 HSPs)
chr8 (177-257)||(15348527-15348607)
chr8 (203-251)||(4032275-4032323)
chr8 (221-257)||(12199972-12200008)
chr8 (221-257)||(12444400-12444436)
chr8 (217-257)||(12194966-12195006)
chr8 (217-257)||(12439394-12439434)
[»] scaffold0508 (1 HSPs)
scaffold0508 (206-257)||(11927-11978)
[»] chr5 (6 HSPs)
chr5 (34-157)||(1811768-1811891)
chr5 (43-155)||(1812186-1812298)
chr5 (205-257)||(29695817-29695869)
chr5 (205-257)||(29687716-29687768)
chr5 (206-257)||(1812090-1812141)
chr5 (205-257)||(29712830-29712882)
[»] chr3 (2 HSPs)
chr3 (107-251)||(11006225-11006369)
chr3 (205-257)||(47452268-47452320)
[»] chr6 (1 HSPs)
chr6 (1-53)||(21015672-21015724)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 7771302 - 7771069
Alignment:
Q  24 ggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggttcgctgaagcaggatcatcgtt 123  Q
    ||||||||||||||||||||||||| ||||||| |||||||   |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  7771302 ggtacaaaagtataaaccctctacacgaacctctaatttcaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcatcgtt 7771203  T
Q  124 aagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttagttatggaggtaagttgaaaatgtgaa 223  Q
    ||||||||| ||||||||||||||| ||||||||| |||  | ||||||||  | |||| ||||  |||||  |||   |||| ||||||||||||||||    
T  7771202 aagaaatgcttcaaaatctatagatcgaatttcatgagattgagttgatatgcataaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaa 7771103  T
Q  224 tttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||| ||||||||||||||||||||||||||||||    
T  7771102 ttttcaaagtgaggatcagagataagagaaaacc 7771069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7773983 - 7774242
Alignment:
Q  1 ccatatgtagatgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaagg 100  Q
    |||||||||||||| ||| | | | ||||||||||||||||||||||| ||||||| |||||||  ||||||||||||||| ||||||||||||||||||    
T  7773983 ccatatgtagatgtttgggtcacgatacaaaagtataaaccctctacacgaacctctaatttcagccggaaaataagattctggaagcgaaaaattaagg 7774082  T
Q  101 ttcgctgaagcag---gatcatcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttag 197  Q
    ||| |||||||||    |||||||||||||||||| |||||| |||||||| ||||||||| |||  | | ||||||  ||| ||||||| ||||||  |    
T  7774083 ttcactgaagcagtatcatcatcgttaagaaatgcttcaaaacctatagatcgaatttcatgagatagagatgatatgcacataattctaggagtgtgcg 7774182  T
Q  198 ttatggaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    || ||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||||    
T  7774183 ttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaacc 7774242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 7789987 - 7789754
Alignment:
Q  24 ggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggttcgctgaagcaggatcatcgtt 123  Q
    ||||||||||||||||||||||||| ||||||| ||||| |   |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  7789987 ggtacaaaagtataaaccctctacacgaacctctaatttaaacaggaaaataagattctggaagcgaaaaattaaggttcactgaagcaggatcatcgtt 7789888  T
Q  124 aagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttagttatggaggtaagttgaaaatgtgaa 223  Q
    ||||||||| |||||||||||||||  |||||||| |||  | ||||||||| | |||| ||||  |||||  |||  ||||| ||||||||||||||||    
T  7789887 aagaaatgcttcaaaatctatagatcaaatttcatgagattgagttgatatacataaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaa 7789788  T
Q  224 tttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||| ||||||||||||| ||||||| ||||||||    
T  7789787 ttttcaaagtgaggatcggagataaaagaaaacc 7789754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 24 - 257
Target Start/End: Complemental strand, 7904931 - 7904697
Alignment:
Q  24 ggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaa-ttaaggttcgctgaagcaggatcatcgt 122  Q
    ||||||||||||||||||||||||| ||||||| |||||||   |||||||||||||| |||||||||||| |||||||||  |||| || ||| ||| |    
T  7904931 ggtacaaaagtataaaccctctacacgaacctctaatttcaactggaaaataagattcgggaagcgaaaaaattaaggttccatgaaccacgatgatcat 7904832  T
Q  123 taagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttagttatggaggtaagttgaaaatgtga 222  Q
    |||||||||| ||||||| || |||| ||||||||| |||  |   ||||||  ||| ||||||| ||||||||| |  || ||| ||||||||||||||    
T  7904831 taagaaatgcttcaaaatataaagattgaatttcatgagatagatatgatatgcacataattctaggagtgttagctgcggcggtgagttgaaaatgtga 7904732  T
Q  223 atttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||||||||||||||||||||||||||||||    
T  7904731 atttgcaaagtgaggatcagagataagagaaaacc 7904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7877644 - 7877385
Alignment:
Q  1 ccatatgtagatgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaagg 100  Q
    |||||||||||||  |||||||  ||||||||||||||||||||| |||||||||| |||||||  ||||||||||| | || |||| |||||||||| |    
T  7877644 ccatatgtagatgattggatgacagtacaaaagtataaaccctctgcatgaacctctaatttcaaccggaaaataaggtccacgaagtgaaaaattaatg 7877545  T
Q  101 ttcgctgaagcaggat---catcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttag 197  Q
    |||  |||||||||||   |||||||||||||||| |||||| |||| ||| ||||||||| |||  | | ||||||  ||| ||||||| ||||||  |    
T  7877544 ttcagtgaagcaggatcatcatcgttaagaaatgcttcaaaacctattgatcgaatttcatgagatagaggtgatatgcacataattctaggagtgtgcg 7877445  T
Q  198 ttatggaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    || ||| ||| ||||||||||||||||||||||| |  ||||||||||||||||||||||    
T  7877444 ttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaacc 7877385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7908252 - 7907990
Alignment:
Q  1 ccatatgtagatgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaagg 100  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||  |||||||| ||||   | |||||||||| ||| |    
T  7908252 ccatatgtagatgtctggaggacggtacaaaagtataaaccctctacatgaacctctaatttcaaccggaaaatgagatcgggtaagcgaaaaagtaatg 7908153  T
Q  101 ttcgctgaagcaggat---catcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgag-tgtta 196  Q
    ||   |||||||||||   |||||||||||||||| | ||||||||||||| || |||||| |||  | ||||||||| ||| |||||||  ||  |       
T  7908152 ttgagtgaagcaggatcatcatcgttaagaaatgctttaaaatctatagatcgagtttcatgagatagagttgatataaacataattctagaagcagcgt 7908053  T
Q  197 gttatg--gaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||| ||  ||||||||||||||||||||||||||||| || ||| ||||||||||||||||||    
T  7908052 gttttgcagaggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaacc 7907990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7237877 - 7238133
Alignment:
Q  1 ccatatgtagatgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaagg 100  Q
    ||||| |||||||| |||| | ||||||||||||||||||||||||||||||||||  ||||||   |||||||||||||| | || | |||||||| ||    
T  7237877 ccatacgtagatgtttggaggttggtacaaaagtataaaccctctacatgaacctctgatttcaacaggaaaataagattccgaaaacaaaaaattacgg 7237976  T
Q  101 ttcgctgaagcaggatcatcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttagtta 200  Q
    |||  |||| |||||||||||||||||||||| |||  ||| || ||| ||||||||| |||    | ||||||  | ||||  ||| |||| |  |||     
T  7237977 ttctgtgaaccaggatcatcgttaagaaatgcttcaggatcgattgatcgaatttcatgagataaaggtgatatgcataaaaacctacgagtatgcgttg 7238076  T
Q  201 tggaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
      |||||| |||| ||||||||||||||||||||||| |||||||||||||||||||    
T  7238077 cagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaacc 7238133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 257
Target Start/End: Complemental strand, 7765538 - 7765286
Alignment:
Q  5 atgtagatgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggttcg 104  Q
    ||||| |||| ||||||| |||||| || |||||| ||||||||||| |||  ||||||| | ||||||||||| || ||||| ||| | |||| ||| |    
T  7765538 atgtatatgtttggatgacggtacataaatataaaacctctacatgaccctttaatttcaaagggaaaataagagtctggaagggaacagttaaagttgg 7765439  T
Q  105 ctgaagcaggatcatcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttagttatgga 204  Q
     |||||||||| |||||||||||||||| |||||||| || ||| ||||||||  |||  | | ||| ||  | |||| |||| ||||||  ||| || |    
T  7765438 gtgaagcaggagcatcgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgt--gttttgca 7765341  T
Q  205 --ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
      | ||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  7765340 tggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaacc 7765286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 7786364 - 7786111
Alignment:
Q  1 ccatatgtagatgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaagg 100  Q
    ||||||||| |||| ||||||| | |||| || |||||| ||||||||||| |||  ||||||| | ||||||||||| || ||||| ||| | |||| |    
T  7786364 ccatatgtaaatgtttggatgacgatacataaatataaaacctctacatgaccctttaatttcaaagggaaaataagagtctggaagggaacagttaaag 7786265  T
Q  101 ttcgctgaagcaggatcatcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttagtta 200  Q
    || | |||||||||| |||||||||||||||| |||||||| || ||| ||||||||  |||  | | ||| ||  | |||| |||| ||||||   ||     
T  7786264 ttgggtgaagcaggagcatcgttaagaaatgcatcaaaatcaattgatcgaatttcaggagatagagctgaaatgcataaaaatctacgagtgtgttttg 7786165  T
Q  201 tggaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaa 254  Q
    |   | ||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  7786164 taaggttaagttggaaatgtgaatttgcaaattgaggatcagagataatagaaa 7786111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 7822890 - 7822634
Alignment:
Q  1 ccatatgtagatgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaagg 100  Q
    ||||| ||| |||||||||  | |||| |||| || |||||||| |||||| |||  ||||||| | ||||||||||||| ||||||| | |||||||||    
T  7822890 ccataggtaaatgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaagg 7822791  T
Q  101 ttcgctgaagcaggatcatcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagac-aaaattctatgagtgttagtt 199  Q
    |||| ||||| | ||||||| |||||  |||| |||| |||||||||| ||||||||| |||    | ||||| || | | ||||||| |||| |  |||    
T  7822790 ttcggtgaaggaagatcatcattaagccatgcatcaacatctatagatcgaatttcatgagataaagatgata-agcctataattctacgagtatgtgtt 7822692  T
Q  200 atggaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
       | ||| | |||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7822691 gcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaacc 7822634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 7800548 - 7800401
Alignment:
Q  11 atgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggttcgctgaag 110  Q
    |||||||||  | |||| |||| || |||||||| |||||| |||  ||||||| | ||||||||||||| ||||||| | ||||||||||||| |||||    
T  7800548 atgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaaggaaaataagatttaggaagcaagaaattaaggttcggtgaag 7800449  T
Q  111 caggatcatcgttaagaaatgcgtcaaaatctatagatggaatttcat 158  Q
     | ||||||| |||||  |||| |||| |||||||||| |||||||||    
T  7800448 gaagatcatcattaagccatgcatcaacatctatagatcgaatttcat 7800401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 7813391 - 7813244
Alignment:
Q  11 atgtctggatgatggtacaaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggttcgctgaag 110  Q
    |||||||||  | |||| |||| || |||||||| |||||| |||  ||||||| | |||||||| |||| ||||||| | |||||||||||||||||||    
T  7813391 atgtctggaaaacggtataaaaataaaaaccctccacatgaccctataatttcaaaaggaaaatacgatttaggaagcaagaaattaaggttcgctgaag 7813292  T
Q  111 caggatcatcgttaagaaatgcgtcaaaatctatagatggaatttcat 158  Q
     | ||||||| |||||  |||| |||| |||||| ||| |||||||||    
T  7813291 gaagatcatcattaagccatgcatcaacatctatcgatcgaatttcat 7813244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 48862960 - 48862906
Alignment:
Q  206 gtaagttgaaaatgtgaatttgcaaagtgaggatc---agagataagagaaaacc 257  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  48862960 gtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaacc 48862906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 45372419 - 45372470
Alignment:
Q  206 gtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||| ||||||||||||||||||||| |||||||||||||||| ||||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaacc 45372470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 48891126 - 48891074
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaacc 48891074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 49041499 - 49041551
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||| |||||| ||||||||||| || ||||||||||||||||||||||    
T  49041499 ggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaacc 49041551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 50251169 - 50251221
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||||||||||  |||||||| |||| ||||||||||||||||||||||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacc 50251221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 33134190 - 33134237
Alignment:
Q  211 ttgaaaatgtgaatttgcaaagtgaggatc---agagataagagaaaa 255  Q
    ||||||||||||||||||||||||||||||   |||||||||||||||    
T  33134190 ttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaa 33134237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 48156788 - 48156840
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||| ||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaacc 48156840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 7800348 - 7800302
Alignment:
Q  211 ttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||| ||||||||||||||| | |||||||||| |||||||||||    
T  7800348 ttgaaattgtgaatttgcaaagcggggatcagagacaagagaaaacc 7800302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 7813191 - 7813145
Alignment:
Q  211 ttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||| ||||| ||||||||||| || |||||||||||||||||||    
T  7813191 ttgaaattgtgactttgcaaagtggggttcagagataagagaaaacc 7813145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 45366582 - 45366634
Alignment:
Q  208 aagttgaaaatgtgaatttgcaaagtgaggatc---agagataagagaaaacc 257  Q
    ||||||||||||||||||||||||||| | |||   |||||||||||||||||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaacc 45366634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 102
Target Start/End: Complemental strand, 50668943 - 50668869
Alignment:
Q  28 caaaagtataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggtt 102  Q
    ||||| |||||| |||||||| ||||||| ||| |||   | ||||||||||| |||||| ||||||||||||||    
T  50668943 caaaaatataaagcctctacacgaacctctaatatcaggagtaaaataagattgaggaagtgaaaaattaaggtt 50668869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 37827356 - 37827401
Alignment:
Q  206 gtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagag 251  Q
    ||||||||||||||||||||||||||||  |||| ||| |||||||    
T  37827356 gtaagttgaaaatgtgaatttgcaaagtcgggattagatataagag 37827401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 257
Target Start/End: Original strand, 48148047 - 48148098
Alignment:
Q  209 agttgaaaatgtgaatttgcaaagtgaggatc---agagataagagaaaacc 257  Q
    |||| ||||||||||||||| |||||||||||   |||||||||||||||||    
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaacc 48148098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 48170947 - 48171002
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatc---agagataagagaaaacc 257  Q
    ||||| ||||||||| ||||||||||||||||||||   ||||||||||| |||||    
T  48170947 ggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaacc 48171002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 257
Target Start/End: Original strand, 48735649 - 48735728
Alignment:
Q  181 aattctatgagtgttagttatggaggtaagttgaaaatgtgaatttgcaaagtgaggatca---gagataagagaaaacc 257  Q
    ||||||| ||||||  ||||||| ||||| || |||||||||||||||||| | || ||||   ||||||||||||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaacc 48735728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 49044590 - 49044642
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||| || ||||||||||||||||||||| |  | |||||||||||||||||    
T  49044590 ggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaacc 49044642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 24309893 - 24309842
Alignment:
Q  206 gtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  24309893 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacc 24309842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 24340130 - 24340079
Alignment:
Q  206 gtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||| |||||| ||||||||||||||||||  |||||||||||| |||||||    
T  24340130 gtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaacc 24340079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 55
Target Start/End: Complemental strand, 24369386 - 24369356
Alignment:
Q  25 gtacaaaagtataaaccctctacatgaacct 55  Q
    |||||||||||||||||||||||||||||||    
T  24369386 gtacaaaagtataaaccctctacatgaacct 24369356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 257
Target Start/End: Complemental strand, 24366865 - 24366820
Alignment:
Q  212 tgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||| |||||||||||||||| |||||  ||||||||||||||||    
T  24366865 tgaaactgtgaatttgcaaagtaaggatttgagataagagaaaacc 24366820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 177 - 257
Target Start/End: Complemental strand, 15348607 - 15348527
Alignment:
Q  177 acaaaattctatgagtgttagttatggaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||||||||| ||||||  |||  || ||||| |||||||||||||||||| |||| |||||||||||||||||||||||    
T  15348607 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaacc 15348527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 4032275 - 4032323
Alignment:
Q  203 gaggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagag 251  Q
    ||||||| ||||||||| ||||||||||||||||||||||| |||||||    
T  4032275 gaggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagag 4032323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 12200008 - 12199972
Alignment:
Q  221 gaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaacc 12199972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 12444436 - 12444400
Alignment:
Q  221 gaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||||||||||||||||||||||||||||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaacc 12444400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 12195006 - 12194966
Alignment:
Q  217 atgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataacc 12194966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 257
Target Start/End: Complemental strand, 12439434 - 12439394
Alignment:
Q  217 atgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataacc 12439394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 11978 - 11927
Alignment:
Q  206 gtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  11978 gtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaacc 11927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 157
Target Start/End: Original strand, 1811768 - 1811891
Alignment:
Q  34 tataaaccctctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggttcgctgaagcaggatcatcgttaagaaatgcg 133  Q
    |||||| |||| |||||| |||  ||||||| | ||||||||||| | ||| ||| || |||||| ||||  | |||||||| ||||||||||||||||     
T  1811768 tataaaacctcaacatgaccctttaatttcaaagggaaaataagactgagggagcaaacaattaaagttccgtaaagcaggaacatcgttaagaaatgca 1811867  T
Q  134 tcaaaatctatagatggaatttca 157  Q
    |||||||| |||||| ||||||||    
T  1811868 tcaaaatcgatagatcgaatttca 1811891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 1812298 - 1812186
Alignment:
Q  43 tctacatgaacctccaatttcatacggaaaataagattcaggaagcgaaaaattaaggttcgctgaagcaggatcatcgttaagaaatgcgtcaaaatct 142  Q
    ||||||||| |||  ||||||| | | ||||||||| | ||||||| || |||||| ||||  |||||||||| |||||||||||||||| ||||||||     
T  1812298 tctacatgaccctttaatttcaaaggaaaaataagactgaggaagcaaacaattaaagttcagtgaagcaggaacatcgttaagaaatgcatcaaaatcg 1812199  T
Q  143 atagatggaattt 155  Q
    |||| | ||||||    
T  1812198 ataggtcgaattt 1812186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29695869 - 29695817
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||||||||||||||||||||||||||||||| | ||| |||||||| ||||    
T  29695869 ggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataacc 29695817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 29687768 - 29687716
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||||||||||||| ||||||||||||||||| | ||| || ||||||||||    
T  29687768 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaacc 29687716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 1812141 - 1812090
Alignment:
Q  206 gtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    ||||||||||||||  ||||||||||||| ||||  ||||||||||||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaacc 1812090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 29712830 - 29712882
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||||||||||||||||||| || | ||  | |||||||||||||||||    
T  29712830 ggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaacc 29712882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 251
Target Start/End: Original strand, 11006225 - 11006369
Alignment:
Q  107 gaagcaggatcatcgttaagaaatgcgtcaaaatctatagatggaatttcatcagaccgggttgatatagacaaaattctatgagtgttagttatggagg 206  Q
    ||||||| ||||||||||||  |||| ||||||||||| ||| ||||||||  ||   | ||||| ||  ||| |||||||| |||||  ||| | | ||    
T  11006225 gaagcagaatcatcgttaagcgatgcttcaaaatctatggatcgaatttcaagagctggagttgacatgaacacaattctattagtgtgtgttctagtgg 11006324  T
Q  207 taagttgaaaatgtgaatttgcaaagtgaggatcagagataagag 251  Q
     ||| | |||||| || ||||||||||||||||||||||||||||    
T  11006325 aaaggtcaaaatgcgattttgcaaagtgaggatcagagataagag 11006369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 47452268 - 47452320
Alignment:
Q  205 ggtaagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaacc 257  Q
    |||||||| ||||||||  ||||||||| ||||||||||||||||||||||||    
T  47452268 ggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaacc 47452320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21015724 - 21015672
Alignment:
Q  1 ccatatgtagatgtctggatgatggtacaaaagtataaaccctctacatgaac 53  Q
    ||||| |||||||| || || ||||| ||||| ||||||||||||||||||||    
T  21015724 ccataggtagatgtttgaatcatggtgcaaaaatataaaccctctacatgaac 21015672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University