View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14216_high_17 (Length: 255)
Name: NF14216_high_17
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_high_17 |
 | |
|
| [»] scaffold1377 (1 HSPs) |
| | |
|
| [»] scaffold1089 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold1377 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 959 - 777
Alignment:
| Q |
18 |
tcagtttgtggtataatattgatatatcaaagcttcaacataactcttatagttttctatggtttgctaaaaatctagatttagaactgcacaaataatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||| ||||||||||||||||||| |
|
|
| T |
959 |
tcagtttgtggtataatattgatatatcaaagcttcaacataactcttattgttttctatggtttgctacaaaactagatatagaactgcacaaataatg |
860 |
T |
|
| Q |
118 |
taacatataagtagcaacatttgaacactcatgaccatggtttactctgtttcctttattggttagttttttcatatttaatt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
859 |
taacatacaagtagcaacatttgaacactcatgaccatggtttactctgtttcctgtattggttagttttatcatatttaatt |
777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 102 - 195
Target Start/End: Complemental strand, 14435016 - 14434923
Alignment:
| Q |
102 |
aactgcacaaataatgtaacatataagtagcaacatttgaacactcatgaccatggtttactctgtttcctttattggttagttttttcatatt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| |||||||| ||||||||||||| |
|
|
| T |
14435016 |
aactgcacaaataatgtaacatataagtagcaacatttgaacactcatgatcatggtttattgtgtttcctgtattggttggttttttcatatt |
14434923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 14435218 - 14435159
Alignment:
| Q |
18 |
tcagtttgtggtataatattgatatatc-aaagcttcaacataactcttatagttttcta |
76 |
Q |
| |
|
|||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14435218 |
tcagtttgtggtgtaatattgagatatagaaagcttcaacataactcttatagttttcta |
14435159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 126
Target Start/End: Complemental strand, 14435162 - 14435127
Alignment:
| Q |
91 |
tctagatttagaactgcacaaataatgtaacatata |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
14435162 |
tctagatttagaactgcacaaataatgtaacttata |
14435127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 57; Significance: 7e-24; HSPs: 2)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 289 - 213
Alignment:
| Q |
50 |
cttcaacataactcttatagttttctatggtttgctaaaaatctagatttagaactgcacaaataatgtaacatata |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
289 |
cttcaacataactcttatagttttctatggtttgcttccaatctagatttagaattgcacaaacaatgtaacatata |
213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 96 - 44
Alignment:
| Q |
108 |
acaaataatgtaacatataagtagcaacatttgaacactcatgaccatggttt |
160 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
96 |
acaaataatgtaacatataagtagcaacatttgaacactcatgatcatggttt |
44 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University