View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_high_19 (Length: 250)
Name: NF14216_high_19
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_high_19 |
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| [»] scaffold0263 (1 HSPs) |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: scaffold0263 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 104 - 238
Target Start/End: Original strand, 6408 - 6542
Alignment:
| Q |
104 |
caaatccaagaaagagccttaatcttctccaccacctcatccacctcaaaattaccattattaaaaatgacatcattccgcaccttacaaattacccaca |
203 |
Q |
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| T |
6408 |
caaatccaagaaagagccttaatcttctccaccacctcatccacctcaaaattaccattattaaaaacgacatcgttccgcgccttccaaataacccaca |
6507 |
T |
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| Q |
204 |
aagaagcatatcaaacaatctaaaaaccatgccta |
238 |
Q |
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| T |
6508 |
aagaagcataccacaccatccaaaatccatgccta |
6542 |
T |
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Target: scaffold1377 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 737 - 635
Alignment:
| Q |
3 |
acaaaaccgacttgttcaagccatatcgcttccaatgttgaactcttaacagtttgtatcacctgtcatctgtcatgtttttagtactactgctcataca |
102 |
Q |
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| T |
737 |
acaataccgacttgttgaagccatttcgcttccaatgtagaactcttaacagtttgtatcacttgtcatctgtcatgtttttagtactactggtcataca |
638 |
T |
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| Q |
103 |
tca |
105 |
Q |
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| T |
637 |
tca |
635 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 122 - 204
Target Start/End: Original strand, 35602265 - 35602347
Alignment:
| Q |
122 |
ttaatcttctccaccacctcatccacctcaaaattaccattattaaaaatgacatcattccgcaccttacaaattacccacaa |
204 |
Q |
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| T |
35602265 |
ttaatcttctctaccacctcatcgacttcaaaagacccattattaaagatgatgtcattcctcaccttccaaatcacccacaa |
35602347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 204
Target Start/End: Original strand, 40492270 - 40492354
Alignment:
| Q |
120 |
ccttaatcttctccaccacctcatccacctcaaaattaccattattaaaaatgacatcattccgcaccttacaaattacccacaa |
204 |
Q |
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| T |
40492270 |
ccttaatcttttccaccacctcatcaacatcaaaagtcccattattaaatataatgtcgttcctcaccttccaaatcacccacaa |
40492354 |
T |
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