View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_high_8 (Length: 378)
Name: NF14216_high_8
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 370
Target Start/End: Original strand, 4848689 - 4849040
Alignment:
| Q |
19 |
gttgtattctctatgatgtaattgtaaactgtggtaatgtttgacagacatggattgttaatataccctttgtggttccatcttttctagtgtaatctct |
118 |
Q |
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| T |
4848689 |
gttgtattctctatgatgtaattgtaaactgtggtagtgtttgacagacatggattgttaatataccctttgtggttccatcttttctagtgtaatctct |
4848788 |
T |
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| Q |
119 |
ttctttacataaagtaatgttctgatctacttttaacacgtatcaaattgaatatgaatatagattagaggaggattatatgatatgttctgtcccgttt |
218 |
Q |
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| T |
4848789 |
ttatttacctaaagtaatgttctgatctacttttaacacgtatcaaattgaatatgaatatagattagaggaggatcatatgatatgttctgtcccgttt |
4848888 |
T |
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| Q |
219 |
tgatccctctgccaaaatgctaccttaatagtaatcacataggtgtccctgtgttttagcaaaaaatcaaagccacccccgaaatagcagtccagtggtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4848889 |
tgatccctctgccaaaatgctaccttaatagtaatcacatagttgtccctgtgttttagcaaaaaatcaaagccacccccgaaatagtagtccagtggtt |
4848988 |
T |
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| Q |
319 |
tgggacactgaatgagttatatattcaggaggtccaaagttcaatctctgct |
370 |
Q |
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| T |
4848989 |
tgggacactgaatgagttatatattcaggaggtccaaagttcaatctctgct |
4849040 |
T |
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