View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14216_low_1 (Length: 718)

Name: NF14216_low_1
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14216_low_1
NF14216_low_1
[»] chr1 (9 HSPs)
chr1 (336-708)||(26791439-26791810)
chr1 (18-236)||(26791109-26791322)
chr1 (485-708)||(26822488-26822711)
chr1 (451-708)||(26785811-26786070)
chr1 (483-715)||(26832563-26832795)
chr1 (56-234)||(26784944-26785117)
chr1 (112-234)||(26817885-26818007)
chr1 (67-234)||(26831581-26831757)
chr1 (571-715)||(41546211-41546355)
[»] chr7 (2 HSPs)
chr7 (111-216)||(41919483-41919588)
chr7 (484-711)||(41917439-41917666)
[»] chr4 (1 HSPs)
chr4 (111-227)||(20237292-20237408)


Alignment Details
Target: chr1 (Bit Score: 306; Significance: 1e-172; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 336 - 708
Target Start/End: Original strand, 26791439 - 26791810
Alignment:
Q  336 tgtgctcatcatgttcttat-tattattgaccaacgattattgcatctttctttataattattctacatttatcgcacccacagacatattatgtattcg 434  Q
    |||| ||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26791439 tgtgttcatcatattcttatatattagtgaccaacgattattgcatctttctttataattattctacatttatcgcacccgcagacatattatgtattcg 26791538  T
Q  435 ggtttcatatattaaagttaatgcgattcttgaagaagaagaaaatgtgaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattg 534  Q
    ||||||||||||||||||||| |||||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  26791539 ggtttcatatattaaagttaaagcgattcttgaagaagaaaaaaa-gtgaagt-accaaacttccagcgagcttgaacgagaccaatctcaggattattg 26791636  T
Q  535 acaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttca 634  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26791637 acaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttca 26791736  T
Q  635 ttccctcctttagtgcaccagctttgtacccatttctgttgtccctaacttcatattttatgttcacacctttg 708  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26791737 ttccctcctttagagcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttg 26791810  T

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Target: chr1; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 26791109 - 26791322
Alignment:
Q  18 ccaacataccacaagaaaacatgaaactacttcaactattctatttgaaaaggaaaattgatgaaattgttttaggcatgagatgagattaggttaccat 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||     ||||    
T  26791109 ccaacataccacaagaaaacatgaaactacttcaactattctttttgaaaaggaaaattgatgaaattgttttaggcatgaggtgagatta-----ccat 26791203  T
Q  118 tgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaacattcatt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26791204 tgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaacattcatt 26791303  T
Q  218 tgcattcactaaaaacata 236  Q
    |||||||||||||||||||    
T  26791304 tgcattcactaaaaacata 26791322  T

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Target: chr1; HSP #3
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 485 - 708
Target Start/End: Original strand, 26822488 - 26822711
Alignment:
Q  485 aattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatc 584  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||    
T  26822488 aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc 26822587  T
Q  585 agcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaact 684  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26822588 agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaact 26822687  T
Q  685 tcatattttatgttcacacctttg 708  Q
    ||||| ||||||||||||||||||    
T  26822688 tcatactttatgttcacacctttg 26822711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 451 - 708
Target Start/End: Original strand, 26785811 - 26786070
Alignment:
Q  451 gttaatgcgattcttgaagaagaag--aaaatgtgaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggat 548  Q
    |||||||||||||| ||||||  ||  |||| | | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||    
T  26785811 gttaatgcgattctagaagaattagggaaaaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaat 26785910  T
Q  549 ggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagt 648  Q
    |||| ||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  26785911 ggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttaga 26786010  T
Q  649 gcaccagctttgtacccatttctgttgtccctaacttcatattttatgttcacacctttg 708  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26786011 gcaccagctttgtacccatttctgttgtccctaacttcatactttatgttcacacctttg 26786070  T

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Target: chr1; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 483 - 715
Target Start/End: Original strand, 26832563 - 26832795
Alignment:
Q  483 gaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaa 582  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||    |||||||| ||||| |||||||||    
T  26832563 gaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaa 26832662  T
Q  583 tcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaa 682  Q
    |||||||||||||| |||||||| |||||||||   |||| ||||||||||||||||||||||| |||||| |||||||| |||||||| ||||||||||    
T  26832663 tcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaa 26832762  T
Q  683 cttcatattttatgttcacacctttgcttctcc 715  Q
    ||||||| ||||| |||||||||||||||||||    
T  26832763 cttcatactttatattcacacctttgcttctcc 26832795  T

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Target: chr1; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 56 - 234
Target Start/End: Original strand, 26784944 - 26785117
Alignment:
Q  56 ttctatttgaaaaggaaaattgatgaaattgttttaggcatgagatgagattaggttaccattgaagccaaagaaggcataagtggaagaccctacttct 155  Q
    |||| |||||| ||||||||  |||||||||||||||| ||| ||||     || ||||||||||||||||||||||||||||| |||||||| ||||||    
T  26784944 ttctttttgaagaggaaaatgcatgaaattgttttaggaatgtgatg-----agcttaccattgaagccaaagaaggcataagtagaagaccccacttct 26785038  T
Q  156 tgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaacattcatttgcattcactaaaaaca 234  Q
    ||||| ||| ||||||| |||||||||||||| | ||||||||||||||| ||||||||||| ||||| ||||||||||    
T  26785039 tgttcaaccgtaaaatgataatcaagtgacatcttttgcatcctcgtcatcaaacattcattcgcatttactaaaaaca 26785117  T

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Target: chr1; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 26817885 - 26818007
Alignment:
Q  112 taccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaaca 211  Q
    |||||||||||||||||||||| |||| |||||| || ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||    
T  26817885 taccattgaagccaaagaaggcgtaagcggaagatcccacttcttgttctaccttaaaatgataatcgagtgacatttgttgcatcctcgtcatcaaaca 26817984  T
Q  212 ttcatttgcattcactaaaaaca 234  Q
    ||| || ||||||||| ||||||    
T  26817985 ttcgttcgcattcactgaaaaca 26818007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 67 - 234
Target Start/End: Original strand, 26831581 - 26831757
Alignment:
Q  67 aaggaaaattgatgaaattgttttaggcatgagatgagattaggtta---------ccattgaagccaaagaaggcataagtggaagaccctacttcttg 157  Q
    ||||||||| ||||||| |||||||| |||| ||||||||||| |||         || ||||||||||||||||| |||| |||||| || ||||||||    
T  26831581 aaggaaaatggatgaaactgttttagccatgcgatgagattagattaggggttttaccgttgaagccaaagaaggcgtaagaggaagatccaacttcttg 26831680  T
Q  158 ttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaacattcatttgcattcactaaaaaca 234  Q
    ||| ||  ||||||| ||||  |||||||| | ||||||||| ||||||||||||||||  ||||||||||||||||    
T  26831681 ttcaactgtaaaatgataattgagtgacatctcttgcatccttgtcattaaacattcatccgcattcactaaaaaca 26831757  T

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Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 571 - 715
Target Start/End: Complemental strand, 41546355 - 41546211
Alignment:
Q  571 tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttc 670  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||  ||||| |||||| |||||||| || || || |||||||||||||| |||||||    
T  41546355 tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc 41546256  T
Q  671 tgttgtccctaacttcatattttatgttcacacctttgcttctcc 715  Q
    | || ||||| |  ||||| |||||||| |  ||||| |||||||    
T  41546255 tattttcccttatctcatactttatgtttatgccttttcttctcc 41546211  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 41919588 - 41919483
Alignment:
Q  111 ttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaac 210  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||  ||||||||||||| |||||||| | |||||| || ||||| | ||    
T  41919588 ttaccgttgaagccaaagaaggcataagtggaagaccccacttcttgttccacagtaaaatggtaatctagtgacatctcttgcattctagtcatcatac 41919489  T
Q  211 attcat 216  Q
    ||||||    
T  41919488 attcat 41919483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 484 - 711
Target Start/End: Complemental strand, 41917666 - 41917439
Alignment:
Q  484 aaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaat 583  Q
    ||||||||||| ||||| ||||||||||  || ||||| ||||||||||  || | ||| || | ||| ||    | |||||| || || ||||||||||    
T  41917666 aaattaccaaatttccaacgagcttgaataagcccaatttcaggattatgcaccataaatggtacggtacgccacaaaaaatcaggctctggttgaaaat 41917567  T
Q  584 cagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagctttgtacccatttctgttgtccctaac 683  Q
    |||||||||| || |||||||  ||||||||    |||| |||||| |||||||| || ||||  || || |||||||| |||||||| |||||||||||    
T  41917566 cagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgtatccatttctattgtccctaac 41917467  T
Q  684 ttcatattttatgttcacacctttgctt 711  Q
    |||||| ||||| ||||| |||||||||    
T  41917466 ttcatactttatattcactcctttgctt 41917439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 20237292 - 20237408
Alignment:
Q  111 ttaccattgaagccaaagaaggcataagtggaagaccctacttcttgttccaccttaaaatggtaatcaagtgacatttgttgcatcctcgtcattaaac 210  Q
    |||||||||||||||||||| |||| ||| |  || || |||||||| || ||  | ||||||||||| |  ||||| | |||||| || ||||  ||||    
T  20237292 ttaccattgaagccaaagaaagcatgagtagctgatccaacttcttgctcaactgtgaaatggtaatccaaagacatctcttgcattcttgtcaacaaac 20237391  T
Q  211 attcatttgcattcact 227  Q
    |||||||||||||||||    
T  20237392 attcatttgcattcact 20237408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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