View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14216_low_11 (Length: 377)

Name: NF14216_low_11
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14216_low_11
NF14216_low_11
[»] chr4 (7 HSPs)
chr4 (71-198)||(9605370-9605495)
chr4 (213-359)||(9601715-9601856)
chr4 (4-92)||(9580693-9580781)
chr4 (4-92)||(9586388-9586476)
chr4 (197-261)||(9574396-9574460)
chr4 (206-270)||(9592954-9593018)
chr4 (112-154)||(9592445-9592487)
[»] chr6 (3 HSPs)
chr6 (112-198)||(29142179-29142265)
chr6 (23-92)||(30036297-30036366)
chr6 (23-92)||(30152033-30152102)
[»] scaffold0110 (1 HSPs)
scaffold0110 (23-91)||(41406-41474)


Alignment Details
Target: chr4 (Bit Score: 101; Significance: 6e-50; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 9605370 - 9605495
Alignment:
Q  71 ccattgatattgttaatgataacggatgatcatgtatatggattatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttatta 170  Q
    ||||||||||||||||||||||  |||||||||||||  |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  9605370 ccattgatattgttaatgataagagatgatcatgtat--ggattatttaacaatcaagaaggttcattatagttaatacctattcaatcttactttatta 9605467  T
Q  171 tccaatgctaattaagctgttatgatgg 198  Q
    ||||||||||||||||||||||||||||    
T  9605468 tccaatgctaattaagctgttatgatgg 9605495  T

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Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 213 - 359
Target Start/End: Original strand, 9601715 - 9601856
Alignment:
Q  213 agtttatgaatcaggcaactcggtaaagcaactacaacgtaaataagaagtaatactcgtttcatctaacaacagtttgtggggatagcagtatcatggt 312  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||     ||||||||||||||||||||||  |  |||||||||     
T  9601715 agtttatgaatcaagcaacttggtaaagaaactacaacgtaaataagaagtaatactc-----atctaacaacagtttgtggggactgtggtatcatggc 9601809  T
Q  313 ggcagtagatgggagatgatatttgcgaatgagaagaggcagcaaac 359  Q
    ||| ||||||||||||||||||||| |||||||| ||||||||||||    
T  9601810 ggcggtagatgggagatgatatttgtgaatgagaggaggcagcaaac 9601856  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 9580693 - 9580781
Alignment:
Q  4 taaggcttctaaacaaggtaagctgattgcaatttgcatagagaaaga-aactgaaatgaagtgaatcccattgatattgttaatgataa 92  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||| ||||||  |||||||||||| |||||| |||||||||||||    
T  9580693 taaggcttctaaacaaggtaagctgattgcaatttgcaga-aaaaagataactgagttgaagtgaatccaattgatgttgttaatgataa 9580781  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 9586388 - 9586476
Alignment:
Q  4 taaggcttctaaacaaggtaagctgattgcaatttgcatagagaaaga-aactgaaatgaagtgaatcccattgatattgttaatgataa 92  Q
    |||||||||||||||||||||||||||||||||||||| | | ||||| ||||||  |||||||||||| |||||| |||||||||||||    
T  9586388 taaggcttctaaacaaggtaagctgattgcaatttgcaga-aaaaagataactgagttgaagtgaatccaattgatgttgttaatgataa 9586476  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 9574460 - 9574396
Alignment:
Q  197 ggacaagtacaaattcagtttatgaatcaggcaactcggtaaagcaactacaacgtaaataagaa 261  Q
    ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| ||||||||||    
T  9574460 ggacaagtacaaattcagtttatgaatcaagcaactcggtaaagaaaccacaacataaataagaa 9574396  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 270
Target Start/End: Original strand, 9592954 - 9593018
Alignment:
Q  206 caaattcagtttatgaatcaggcaactcggtaaagcaactacaacgtaaataagaagtaatactc 270  Q
    |||||||||| || |||||| ||||||| |||||| ||| ||||  |||||||||||||||||||    
T  9592954 caaattcagtctacgaatcaagcaactccgtaaagaaaccacaatataaataagaagtaatactc 9593018  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 154
Target Start/End: Original strand, 9592445 - 9592487
Alignment:
Q  112 attatttaacaatcaagaaggtccgttatagttaatacctatt 154  Q
    ||||||||||||||||||| |||| |||||||| |||||||||    
T  9592445 attatttaacaatcaagaaagtccattatagtttatacctatt 9592487  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 29142265 - 29142179
Alignment:
Q  112 attatttaacaatcaagaaggtccgttatagttaatacctattcaatcttactttattatccaatgctaattaagctgttatgatgg 198  Q
    ||||||||||||||| |||| | | |||| ||| || | ||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  29142265 attatttaacaatcatgaagctgcattattgtttatgcttattctatcttacattattatccaatgcaaattaagctgttatgatgg 29142179  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 30036297 - 30036366
Alignment:
Q  23 aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgataa 92  Q
    ||||||||||||||||||| ||||||| || ||||| | || ||||||| |||| | || ||||||||||    
T  30036297 aagctgattgcaatttgcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataa 30036366  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 92
Target Start/End: Original strand, 30152033 - 30152102
Alignment:
Q  23 aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgataa 92  Q
    ||||||||||||||||||| ||||||| || ||||| | || ||||||| |||| | || ||||||||||    
T  30152033 aagctgattgcaatttgcacagagaaataacctgaattaaactgaatccaattggtgttcttaatgataa 30152102  T

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Target: scaffold0110 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 41474 - 41406
Alignment:
Q  23 aagctgattgcaatttgcatagagaaagaaactgaaatgaagtgaatcccattgatattgttaatgata 91  Q
    ||||||||||||||||||| ||||||| || ||||| |||||||||||| |||| | ||||||||||||    
T  41474 aagctgattgcaatttgcacagagaaataacctgaagtgaagtgaatccaattggtgttgttaatgata 41406  T

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