View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_low_13 (Length: 371)
Name: NF14216_low_13
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 13 - 355
Target Start/End: Original strand, 2892063 - 2892405
Alignment:
| Q |
13 |
aatattcagttgtatcaaacgtagtacaaggattgttacatccacctggtaccttaagtggagtaggacactctccgttaatatccgcggtacaattaac |
112 |
Q |
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| T |
2892063 |
aatattcagttgtatcaaacgtagtacaaggattgttacatccacctggtaccttaagtggagtaggacactctccgttaatatcggcggtacaattaac |
2892162 |
T |
|
| Q |
113 |
ggtaccacaagaatttaaagacggttttaactgaattggaatattgaaaccttgtacaagcgaaacatcgtaaaaatcaaggtcgttatacatgttcaaa |
212 |
Q |
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| T |
2892163 |
ggtaccacaagaatttaaagacggttttaactgaattggaatattgaaaccttgtacaagcgaaacatcgtaaaaatcaaggtcgttatacatgttcaaa |
2892262 |
T |
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| Q |
213 |
gcaaattccatgattgtgtttggtggtgtaccaattgttttacactctagtgtcccattgcaatcaccggtttgacactttccgagacctgaattgtcga |
312 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892263 |
gcaaattccatgattgtgtttggtggcgtaccaattgttttacactctagtgtcccattgcaatcaccggtttgacactttccgagacctgaattgtcga |
2892362 |
T |
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| Q |
313 |
aagtgcaattggttcgaccccagattcttgcgttacttgtacc |
355 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2892363 |
aagtgcaattggttcgaccccagattcttgcgttacttgtacc |
2892405 |
T |
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