View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_low_2 (Length: 664)
Name: NF14216_low_2
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 7 - 647
Target Start/End: Original strand, 14085064 - 14085707
Alignment:
| Q |
7 |
tagcagcacagaaagaatatttgttaacctgttnnnnnnnnntaaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagc |
106 |
Q |
| |
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||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085064 |
tagcatcacagaaagaatatttgttaacctgttaaaaaaaaataaagaaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagc |
14085163 |
T |
|
| Q |
107 |
aaactaaaatcaaagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagt |
203 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
14085164 |
aaactaaaatcaaagacaactatcaaaacagagtaaacatagactaaatcaaatacaaagttaaaacaaaaatgctaaaccaatattaccctaaaagagt |
14085263 |
T |
|
| Q |
204 |
aaaagaattaccttcatgtttttggacaaacattcatatgtttaagcatgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaa |
303 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14085264 |
aaaagaatcaccttcatgtttttggacaaacattcatatgtttaagcatgttgttagtttgatggctagaactatttgacgcaaaagaagcaaaacagaa |
14085363 |
T |
|
| Q |
304 |
gttacaaaatgtggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaac |
403 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085364 |
gttacaaaattcggcgtatgcgtctcttttcttcgtaaaatgtctccaagccattgaaggatgtctatcatgttttcttttctttagttttagcactaac |
14085463 |
T |
|
| Q |
404 |
tcagcatgttcatgtccttggcctcgcagtaactcagcagcctcgagactccttgagttctagcaactagaattggaatttgaggcaaaggattcacact |
503 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085464 |
tcaacatgttcatgtccttggcctcgcagtaactcagcagcctcgagactccttgagttctagcaactagaattggaatttgaggcaaaggattcacact |
14085563 |
T |
|
| Q |
504 |
ggcagtaccactttccatgtgtctnnnnnnncaaaataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcata |
603 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085564 |
ggcagtaccactttccatgtgtctaaaaaaacaaaataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcata |
14085663 |
T |
|
| Q |
604 |
agaatcaacaaaatatggataaactcaacaaagtatgcatcaaa |
647 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085664 |
agaatcaacaaaatatggataaactcaacaaagtatgcatcaaa |
14085707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 566
Target Start/End: Original strand, 39289585 - 39289642
Alignment:
| Q |
509 |
taccactttccatgtgtctnnnnnnncaaaataaataacagaccattagaataagaaa |
566 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
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|
| T |
39289585 |
taccactttccatgtgtctatacaagcaacataaataacacaccattagaataagaaa |
39289642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 509 - 566
Target Start/End: Complemental strand, 39383751 - 39383694
Alignment:
| Q |
509 |
taccactttccatgtgtctnnnnnnncaaaataaataacagaccattagaataagaaa |
566 |
Q |
| |
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||||||||||||||||||| ||| |||||||||| ||||||||||||||||| |
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|
| T |
39383751 |
taccactttccatgtgtctatacaagcaacataaataacacaccattagaataagaaa |
39383694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 54 - 427
Target Start/End: Complemental strand, 12190254 - 12189888
Alignment:
| Q |
54 |
aaaatatacattagtaactaacaaatcaaagccataaaatatgacagtatagcaaactaaaatcaaagacaactatcaaaacagagtaaacatagactaa |
153 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||| ||||||| ||| || ||||||||| |||||||||| ||| ||||| ||||| || ||||||||| |
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| T |
12190254 |
aaaatatacattagta-ctaataaatcaaagccacaaaatataacacta--gcaaactaacatcaaagacatctaccaaaatagagttaaaatagactaa |
12190158 |
T |
|
| Q |
154 |
atcaaatacaaagttaaaacaa---tgctaaaccaatattaacctaaaagagtaaaagaattaccttcatgtttttggacaaacattcatatgtttaagc |
250 |
Q |
| |
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|||||||||||||||| || || | ||||| ||| || ||| | | | ||||| || |||||||||||||||||||||| |||| ||||||||| |
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|
| T |
12190157 |
atcaaatacaaagttacaataaaattactaaatcaacat-aactcagagtaataaaaaaactaccttcatgtttttggacaaatcatcatgtgtttaagc |
12190059 |
T |
|
| Q |
251 |
atgttgttagttcgatggctagaactatttgacgcaaaagaagcaaaacagaagttacaaaatgtggcgtatgcgtctcttttcttcgtaaaatgtctcc |
350 |
Q |
| |
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|||||||||||||||||| | ||| |||||| ||||||||| || || |||||||||| ||| | |||| |||||||| |||||||||||| |
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| T |
12190058 |
atgttgttagttcgatggttggaagcatttgaaacaaaagaagtgaagcaatagttacaaaa---ggca---gtgtcttttttcttcataaaatgtctcc |
12189965 |
T |
|
| Q |
351 |
aagccattgaaggatgtctatcatgttttcttttctttagttttagcactaactcagcatgttcatgtccttggcct |
427 |
Q |
| |
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|| ||||||||||| ||||| || ||||||||||||||||||||||||||| || |||||||||| ||||||||||| |
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| T |
12189964 |
aaaccattgaaggaggtctagcaggttttcttttctttagttttagcactaccttagcatgttcaggtccttggcct |
12189888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 539 - 627
Target Start/End: Complemental strand, 12189772 - 12189684
Alignment:
| Q |
539 |
ataaataacagaccattagaataagaaagacacaaagacacaatgaactcaaaggaagaagcataagaatcaacaaaatatggataaac |
627 |
Q |
| |
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||||| |||| |||||||| |||||||||| ||||||| | ||||||||| |||||||||| ||||||||||||||| |||| |||||| |
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| T |
12189772 |
ataaacaacaaaccattaggataagaaagaaacaaagaaaaaatgaactccaaggaagaagtataagaatcaacaaagtatgcataaac |
12189684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 469 - 527
Target Start/End: Complemental strand, 12189884 - 12189826
Alignment:
| Q |
469 |
actagaattggaatttgaggcaaaggattcacactggcagtaccactttccatgtgtct |
527 |
Q |
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||||||||||||||||||| ||||||||||||||| |||||| || ||| ||||||||| |
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| T |
12189884 |
actagaattggaatttgagccaaaggattcacactagcagtatcagttttcatgtgtct |
12189826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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