View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_low_20 (Length: 252)
Name: NF14216_low_20
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 17 - 237
Target Start/End: Original strand, 55072268 - 55072488
Alignment:
| Q |
17 |
ttcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaatgagattggtacaatatatctgcttctgttttcaccaacataaacagcaaag |
116 |
Q |
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| T |
55072268 |
ttcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaatgagattggtacaatatatctgcttctgttttcaccaacataaacagcaaaa |
55072367 |
T |
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| Q |
117 |
tgaccttttgggacatcaagaggaagaccatgatcatcttcatcttgatcatactcatttttcttacctaagcttgaacatctccttaggatttgcttaa |
216 |
Q |
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| T |
55072368 |
tgaccttttgggacatcaagaggaagaccatgatcatcttcatcttgatcatactcatttttcttacctaagcttgaacatctccttaggatttgcttaa |
55072467 |
T |
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| Q |
217 |
gcactgtgttctgagcaagct |
237 |
Q |
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| T |
55072468 |
gcactgtgttctgagcaagct |
55072488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 52993165 - 52993240
Alignment:
| Q |
75 |
acaatatatctgcttctgttttcaccaacataaacagcaaagtgaccttttgggacatcaagaggaagaccatgat |
150 |
Q |
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| T |
52993165 |
acaatgtacctgcttctgttttcaccaacatatacaacaaagtgaccttttggaacatccaaacgaagaccatgat |
52993240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 27393560 - 27393676
Alignment:
| Q |
17 |
ttcttcagcttgtcgaaggagtgactgaaattgagggtgagttaagaatgagattggtacaatatatctgcttctgttttcaccaacataaacagcaaag |
116 |
Q |
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| T |
27393560 |
ttcttcagcttgacgaagtagtgattgaaactcaggatgagttaaaaaagatattggaacaatatatctactacggttttcacctacgtagactggaaaa |
27393659 |
T |
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| Q |
117 |
tgaccttttgggacatc |
133 |
Q |
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| T |
27393660 |
tgaccttttggaacatc |
27393676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 64 - 133
Target Start/End: Complemental strand, 32168574 - 32168505
Alignment:
| Q |
64 |
atgagattggtacaatatatctgcttctgttttcaccaacataaacagcaaagtgaccttttgggacatc |
133 |
Q |
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| T |
32168574 |
atgaaattggaacaatatatcttgttctattttctccaacataaacaacaaaatgaccttttggtacatc |
32168505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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