View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_low_22 (Length: 241)
Name: NF14216_low_22
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 41009736 - 41009523
Alignment:
| Q |
17 |
atatacattataagacaatcatttaaccattgatcacccatctctttctcatccaacgtgcttctgttctgtagttatgttgtgttgtgcgcatttgccg |
116 |
Q |
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| T |
41009736 |
atatacattataagacgatcatttaaccattgatcacccatctctttctcatccaacgtgcttctgttctgcagttatgttgtgttgtgcgcatttgctg |
41009637 |
T |
|
| Q |
117 |
agagaaagaagaatgaaaagcgtttgctgagaagtggagggaaagtgtgttcttgtgtttcaggctgagtttgtggaacaaacaaaaagaaaattaaaat |
216 |
Q |
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| T |
41009636 |
agagaaagaagaatgaaaagcgtttgctgagaagtggagggaaagtgtgttcttgtgtttcaggctgagtttgtggaacaaacaaaaagaaaattaaaat |
41009537 |
T |
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| Q |
217 |
ttggatctgtgctg |
230 |
Q |
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||||||||| |||| |
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| T |
41009536 |
ttggatctgggctg |
41009523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Original strand, 12585748 - 12585776
Alignment:
| Q |
29 |
agacaatcatttaaccattgatcacccat |
57 |
Q |
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| T |
12585748 |
agacaatcatttaaccattgatcacccat |
12585776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 57
Target Start/End: Complemental strand, 22972909 - 22972881
Alignment:
| Q |
29 |
agacaatcatttaaccattgatcacccat |
57 |
Q |
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| T |
22972909 |
agacaatcatttaaccattgatcacccat |
22972881 |
T |
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