View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_low_4 (Length: 554)
Name: NF14216_low_4
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 1 - 538
Target Start/End: Complemental strand, 24993368 - 24992840
Alignment:
| Q |
1 |
atttcccaaaggatgggcacagagagagccaaaaacctgtgaccgaattttcatcgatatcatcttgttcatatttgagccgctccaacacattatttaa |
100 |
Q |
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| T |
24993368 |
atttcccaaaggatgggcacagagagagccaaaaaccagtgaccgaattttcatcgatatcatctcgttcatattttagccgctccaacacattatttaa |
24993269 |
T |
|
| Q |
101 |
caataataaatcagtttactgcacatgctagcattttgcagatgccatacttgttgtaaatttgcagctttagttttgtattcaaaagctatatagataa |
200 |
Q |
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| T |
24993268 |
caatattaaatcagtttactgcacatgctagcattttgcagatgccatacttgttgtaaatttgcagctttagttttgtattcaaaagctatatatctaa |
24993169 |
T |
|
| Q |
201 |
atatacacacacattcatctacacacaaacctttaagagtgctgatttacaccgttgattctatcaccagccacaccctacaatagatatcacaagccaa |
300 |
Q |
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| T |
24993168 |
atatacaca----ttcatctacacacaaacctttacgagtgctgatttacaccgttgatactatcaccagccacaccctacaatagatatcacaagcaaa |
24993073 |
T |
|
| Q |
301 |
aaattaataagaaataaggtttgaataataatctgaacactaatgacatgataattttaaaagttcgaaattaattgaatatagagaaactgaaaatcag |
400 |
Q |
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| T |
24993072 |
aaattaataagaaataaggtttgcataataatctgaacactaatggcatgataattttaaaagttcgaaattaattgaatatagagaaactgaaaatcag |
24992973 |
T |
|
| Q |
401 |
atcagaggtgacctcttcaattcaactgtcttttctctaagtcattcaaagttttcgggctatgatctccgcttgagcttctgattaattgaatatagag |
500 |
Q |
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| T |
24992972 |
atcagaggtgacctct-----tcaactgtcttttctctaagtcattcaaagttttcgggctatgatctccgcttgagcttctgattaattgaatatagag |
24992878 |
T |
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| Q |
501 |
cttctgattatctgtaaccacaaatagggagagaagac |
538 |
Q |
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| T |
24992877 |
cttctgattatctgtaaccacaaatagggagagaagac |
24992840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 277
Target Start/End: Complemental strand, 1618173 - 1618104
Alignment:
| Q |
209 |
acacattcatctacacacaaacctttaagagtgctgatttacaccgttgatt-ctatcaccagccacacc |
277 |
Q |
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| T |
1618173 |
acacattcatctaagcacaaacctttaagagtgctggtttacacccttaattattatcacaagccacacc |
1618104 |
T |
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