View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14216_low_5 (Length: 546)
Name: NF14216_low_5
Description: NF14216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14216_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 2036349 - 2036031
Alignment:
| Q |
18 |
gttagttcgtaaaatatcttgaaattattacacaatgagttgtgattggatgcatgtgnnnnnnnngttttcattgatagtgcatacctatttctcattt |
117 |
Q |
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| T |
2036349 |
gttagttcgtaaaatatctcgaaattattacacaatgagttgtgattgaatgcatgtgaaaaaaaagttttcattgatagtgaatacctatttctcattt |
2036250 |
T |
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| Q |
118 |
cacattcaagtgcatagtatatgtataatgtagtaactactaagtaatacattgctcacacaatcatgttttatatcaatagtaattactaattgaacaa |
217 |
Q |
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| T |
2036249 |
cacattcaagtgcatagtatatgtataatgtagtacctactaagtaatacattgctcacacaatcatgttttatatcaatagtaattactaattgaacaa |
2036150 |
T |
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| Q |
218 |
ggcaatgatagtataaatatacaaggaactttaaagttcattgagttacaatttcatgtgatttacaatatgaagttgagtattcagtcattcactgcaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2036149 |
ggcaatgatagtataaatatacaaggaactttaaagttcattgagttacaatttcatgtgatttacaatatgaagttgagtattcagtcattcactgcaa |
2036050 |
T |
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| Q |
318 |
agataagataaaaacctac |
336 |
Q |
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| T |
2036049 |
agataagataaaaacctac |
2036031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 392 - 534
Target Start/End: Complemental strand, 2035974 - 2035832
Alignment:
| Q |
392 |
cttgattggattatgcagagataaatttgatatgtgagaaactaagtgcctcagttgggttgggaattgtggacattgattcaaagttaagggattctcc |
491 |
Q |
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| T |
2035974 |
cttgattggattctgcagagataaatttgatatgtgagaaactaagtgcctcagttgggttgggaattgtggacattgattcaaagttaagggattctcc |
2035875 |
T |
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| Q |
492 |
tatttggacttcatatgcccctgatatatacactaatattcat |
534 |
Q |
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| T |
2035874 |
tatttggacttcatatgcccctgatatatacactaatattcat |
2035832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 458 - 527
Target Start/End: Original strand, 49889562 - 49889631
Alignment:
| Q |
458 |
ttgtggacattgattcaaagttaagggattctcctatttggacttcatatgcccctgatatatacactaa |
527 |
Q |
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| T |
49889562 |
ttgtggacatcgataaaaagttaatggattctcaaatttggagtgcttatgcccctgatatatacactaa |
49889631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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